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As of 11-May-2022 number of released structures: 12077
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NDB ID: 1F84  PDB ID: 1F84 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1F84|1|A|A|231F84|1|A|A|24s35
1F84|1|A|A|231F84|1|A|A|6s35
1F84|1|A|A|231F84|1|A|A|9s55
1F84|1|A|A|231F84|1|A|G|22
1F84|1|A|A|231F84|1|A|U|8tHW
1F84|1|A|A|241F84|1|A|A|23s53
1F84|1|A|A|241F84|1|A|A|240BPh
1F84|1|A|A|241F84|1|A|A|25s35
1F84|1|A|A|241F84|1|A|A|6tHH
1F84|1|A|A|241F84|1|A|G|5s33
1F84|1|A|A|251F84|1|A|A|24s53
1F84|1|A|A|251F84|1|A|A|250BPh
1F84|1|A|A|251F84|1|A|G|26s35
1F84|1|A|A|251F84|1|A|G|5tHS
1F84|1|A|A|61F84|1|A|A|23s53
1F84|1|A|A|61F84|1|A|A|24tHH
1F84|1|A|A|61F84|1|A|A|60BPh
1F84|1|A|A|61F84|1|A|G|5s33
1F84|1|A|A|61F84|1|A|G|7ns55
1F84|1|A|A|61F84|1|A|U|8s55
1F84|1|A|A|91F84|1|A|A|23s55
1F84|1|A|A|91F84|1|A|A|9n0BP
1F84|1|A|A|91F84|1|A|G|10s35
1F84|1|A|A|91F84|1|A|G|22tHS
1F84|1|A|A|91F84|1|A|U|8s53
1F84|1|A|C|191F84|1|A|C|190BPh
1F84|1|A|C|191F84|1|A|G|12cWW
1F84|1|A|C|191F84|1|A|G|17s55
1F84|1|A|C|191F84|1|A|G|20ns35
1F84|1|A|C|191F84|1|A|U|13ncWW
1F84|1|A|C|211F84|1|A|C|210BPh
1F84|1|A|C|211F84|1|A|G|10cWW
1F84|1|A|C|211F84|1|A|G|20s53
1F84|1|A|C|211F84|1|A|G|22s35
1F84|1|A|C|281F84|1|A|C|280BPh
1F84|1|A|C|281F84|1|A|C|29s35
1F84|1|A|C|281F84|1|A|G|2cWW
1F84|1|A|C|281F84|1|A|G|27s53
1F84|1|A|C|291F84|1|A|C|28s53
1F84|1|A|C|291F84|1|A|C|290BPh
1F84|1|A|C|291F84|1|A|G|1ncWW
1F84|1|A|C|291F84|1|A|G|2ns55
1F84|1|A|C|31F84|1|A|C|30BPh
1F84|1|A|C|31F84|1|A|C|4s35
1F84|1|A|C|31F84|1|A|G|2s53
1F84|1|A|C|31F84|1|A|G|27cWW
1F84|1|A|C|41F84|1|A|C|3s53
1F84|1|A|C|41F84|1|A|C|40BPh
1F84|1|A|C|41F84|1|A|G|26cWW
1F84|1|A|C|41F84|1|A|G|27s55
1F84|1|A|C|41F84|1|A|G|5s35
1F84|1|A|G|11F84|1|A|C|29ncWW
1F84|1|A|G|11F84|1|A|G|10BPh
1F84|1|A|G|11F84|1|A|G|2s35
1F84|1|A|G|101F84|1|A|A|9s53
1F84|1|A|G|101F84|1|A|C|21cWW
1F84|1|A|G|101F84|1|A|G|100BPh
1F84|1|A|G|101F84|1|A|G|22s55
1F84|1|A|G|101F84|1|A|U|11s35
1F84|1|A|G|121F84|1|A|C|19cWW
1F84|1|A|G|121F84|1|A|G|12n0BP
1F84|1|A|G|121F84|1|A|G|20s55
1F84|1|A|G|121F84|1|A|U|11s53
1F84|1|A|G|121F84|1|A|U|13s35
1F84|1|A|G|151F84|1|A|G|150BPh
1F84|1|A|G|151F84|1|A|G|16s35
1F84|1|A|G|161F84|1|A|G|15s53
1F84|1|A|G|171F84|1|A|C|19s55
1F84|1|A|G|171F84|1|A|G|16
1F84|1|A|G|171F84|1|A|G|170BPh
1F84|1|A|G|171F84|1|A|U|13s53
1F84|1|A|G|171F84|1|A|U|14ntWS
1F84|1|A|G|21F84|1|A|C|28cWW
1F84|1|A|G|21F84|1|A|C|29ns55
1F84|1|A|G|21F84|1|A|C|3s35
1F84|1|A|G|21F84|1|A|G|1s53
1F84|1|A|G|21F84|1|A|G|20BPh
1F84|1|A|G|201F84|1|A|C|19ns53
1F84|1|A|G|201F84|1|A|C|21s35
1F84|1|A|G|201F84|1|A|G|12s55
1F84|1|A|G|201F84|1|A|G|200BPh
1F84|1|A|G|201F84|1|A|U|11cWW
1F84|1|A|G|221F84|1|A|A|9tSH
1F84|1|A|G|221F84|1|A|C|21s53
1F84|1|A|G|221F84|1|A|G|10s55
1F84|1|A|G|221F84|1|A|G|220BPh
1F84|1|A|G|221F84|1|A|G|7s33
1F84|1|A|G|221F84|1|A|U|8s33n5BP
1F84|1|A|G|261F84|1|A|A|25s53
1F84|1|A|G|261F84|1|A|C|4cWW
1F84|1|A|G|261F84|1|A|G|260BPh
1F84|1|A|G|261F84|1|A|G|27s35
1F84|1|A|G|261F84|1|A|G|5s55
1F84|1|A|G|271F84|1|A|C|28s35
1F84|1|A|G|271F84|1|A|C|3cWW
1F84|1|A|G|271F84|1|A|C|4s55
1F84|1|A|G|271F84|1|A|G|26s53
1F84|1|A|G|271F84|1|A|G|270BPh
1F84|1|A|G|51F84|1|A|A|24s33n5BP
1F84|1|A|G|51F84|1|A|A|25tSHn3BP
1F84|1|A|G|51F84|1|A|A|6s33
1F84|1|A|G|51F84|1|A|C|4s53
1F84|1|A|G|51F84|1|A|G|26s55
1F84|1|A|G|51F84|1|A|G|50BPh
1F84|1|A|G|71F84|1|A|A|234BPh
1F84|1|A|G|71F84|1|A|A|6ns55
1F84|1|A|G|71F84|1|A|G|22s33
1F84|1|A|G|71F84|1|A|U|8cSH
1F84|1|A|U|111F84|1|A|G|10s53
1F84|1|A|U|111F84|1|A|G|12s35
1F84|1|A|U|111F84|1|A|G|20cWW
1F84|1|A|U|111F84|1|A|U|110BPh
1F84|1|A|U|131F84|1|A|C|19ncWW
1F84|1|A|U|131F84|1|A|G|12s53
1F84|1|A|U|131F84|1|A|G|17s35
1F84|1|A|U|131F84|1|A|U|130BPh
1F84|1|A|U|131F84|1|A|U|14ns35
1F84|1|A|U|141F84|1|A|G|17ntSW
1F84|1|A|U|141F84|1|A|U|13ns53n9BP
1F84|1|A|U|141F84|1|A|U|140BPh
1F84|1|A|U|181F84|1|A|G|17n9BP
1F84|1|A|U|81F84|1|A|A|23tWH
1F84|1|A|U|81F84|1|A|A|6s55
1F84|1|A|U|81F84|1|A|A|9s35
1F84|1|A|U|81F84|1|A|G|22s33
1F84|1|A|U|81F84|1|A|G|7cHSn0BP
1F84|1|A|U|81F84|1|A|U|80BPh


Base-PairsCount (11)Relative Frequency
cWW60.545
tWH10.091
tHH10.091
cHS10.091
tHS20.182
Base-PhosphateCount (24)Relative Frequency
4BPh10.042
0BPh230.958
Base-StackingCount (17)Relative Frequency
s3340.235
s5360.353
s5570.412

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)