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As of 21-Aug-2019 number of released structures: 10343
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NDB ID: 1F9L  PDB ID: 1F9L 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1F9L|1|A|A|111F9L|1|A|A|110BPh
1F9L|1|A|A|111F9L|1|A|A|12s35
1F9L|1|A|A|121F9L|1|A|A|11s53
1F9L|1|A|A|121F9L|1|A|A|13s35
1F9L|1|A|A|131F9L|1|A|A|12s53
1F9L|1|A|A|131F9L|1|A|G|10ntHS
1F9L|1|A|A|151F9L|1|A|A|150BPh
1F9L|1|A|A|151F9L|1|A|G|14s53
1F9L|1|A|A|151F9L|1|A|U|16s35
1F9L|1|A|A|151F9L|1|A|U|8cWW
1F9L|1|A|A|51F9L|1|A|A|5n0BP
1F9L|1|A|A|51F9L|1|A|A|6s35
1F9L|1|A|A|51F9L|1|A|C|19s55
1F9L|1|A|A|51F9L|1|A|G|18cWW
1F9L|1|A|A|51F9L|1|A|G|4s53
1F9L|1|A|A|61F9L|1|A|A|5s53
1F9L|1|A|A|61F9L|1|A|G|17cWW
1F9L|1|A|A|61F9L|1|A|G|18s55
1F9L|1|A|A|61F9L|1|A|G|7s35
1F9L|1|A|C|191F9L|1|A|A|5s55
1F9L|1|A|C|191F9L|1|A|C|190BPh
1F9L|1|A|C|191F9L|1|A|G|18s53
1F9L|1|A|C|191F9L|1|A|G|20s35
1F9L|1|A|C|191F9L|1|A|G|4cWW
1F9L|1|A|C|211F9L|1|A|C|210BPh
1F9L|1|A|C|211F9L|1|A|C|22ns35
1F9L|1|A|C|211F9L|1|A|G|2cWW
1F9L|1|A|C|211F9L|1|A|G|20s53
1F9L|1|A|C|221F9L|1|A|C|21ns53
1F9L|1|A|C|221F9L|1|A|C|220BPh
1F9L|1|A|C|221F9L|1|A|G|1cWW
1F9L|1|A|C|31F9L|1|A|C|30BPh
1F9L|1|A|C|31F9L|1|A|G|2s53
1F9L|1|A|C|31F9L|1|A|G|20cWW
1F9L|1|A|C|91F9L|1|A|C|90BPh
1F9L|1|A|C|91F9L|1|A|G|10s35
1F9L|1|A|C|91F9L|1|A|G|14cWW
1F9L|1|A|C|91F9L|1|A|U|8s53
1F9L|1|A|G|11F9L|1|A|C|22cWW
1F9L|1|A|G|11F9L|1|A|G|1n0BP
1F9L|1|A|G|11F9L|1|A|G|2ns35
1F9L|1|A|G|101F9L|1|A|A|13ntSH
1F9L|1|A|G|101F9L|1|A|C|9s53
1F9L|1|A|G|101F9L|1|A|G|100BPh
1F9L|1|A|G|101F9L|1|A|G|14s55
1F9L|1|A|G|141F9L|1|A|A|15s35
1F9L|1|A|G|141F9L|1|A|C|9cWW
1F9L|1|A|G|141F9L|1|A|G|10s55
1F9L|1|A|G|141F9L|1|A|G|140BPh
1F9L|1|A|G|171F9L|1|A|A|6cWW
1F9L|1|A|G|171F9L|1|A|G|170BPh
1F9L|1|A|G|171F9L|1|A|G|18s35
1F9L|1|A|G|171F9L|1|A|G|7s55
1F9L|1|A|G|181F9L|1|A|A|5cWW
1F9L|1|A|G|181F9L|1|A|A|6s55
1F9L|1|A|G|181F9L|1|A|C|19s35
1F9L|1|A|G|181F9L|1|A|G|17s53
1F9L|1|A|G|21F9L|1|A|C|21cWW
1F9L|1|A|G|21F9L|1|A|C|3s35
1F9L|1|A|G|21F9L|1|A|G|1ns53
1F9L|1|A|G|21F9L|1|A|G|20BPh
1F9L|1|A|G|201F9L|1|A|C|19s53
1F9L|1|A|G|201F9L|1|A|C|21s35
1F9L|1|A|G|201F9L|1|A|C|3cWW
1F9L|1|A|G|201F9L|1|A|G|200BPh
1F9L|1|A|G|201F9L|1|A|G|4s55
1F9L|1|A|G|41F9L|1|A|A|5s35
1F9L|1|A|G|41F9L|1|A|C|19cWW
1F9L|1|A|G|41F9L|1|A|C|3
1F9L|1|A|G|41F9L|1|A|G|20s55
1F9L|1|A|G|41F9L|1|A|G|40BPh
1F9L|1|A|G|71F9L|1|A|A|6s53
1F9L|1|A|G|71F9L|1|A|G|17s55
1F9L|1|A|G|71F9L|1|A|G|70BPh
1F9L|1|A|G|71F9L|1|A|U|16cWW
1F9L|1|A|G|71F9L|1|A|U|8s35
1F9L|1|A|U|161F9L|1|A|A|15s53
1F9L|1|A|U|161F9L|1|A|G|7cWW
1F9L|1|A|U|161F9L|1|A|U|16n0BP
1F9L|1|A|U|81F9L|1|A|A|15cWW
1F9L|1|A|U|81F9L|1|A|C|9s35
1F9L|1|A|U|81F9L|1|A|G|7s53
1F9L|1|A|U|81F9L|1|A|U|80BPh


Base-PairsCount (9)Relative Frequency
cWW91.000
Base-PhosphateCount (15)Relative Frequency
0BPh151.000
Base-StackingCount (11)Relative Frequency
s5360.545
s5550.455

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)