A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077
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NDB ID: 1GTC  PDB ID: 1GTC 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1GTC|1|B|A|41GTC|1|B|A|40BPh
1GTC|1|B|A|41GTC|1|B|C|3s53
1GTC|1|B|C|21GTC|1|B|C|2n0BP
1GTC|1|B|C|21GTC|1|B|C|3s35
1GTC|1|B|C|21GTC|1|B|G|1s53
1GTC|1|B|C|31GTC|1|B|A|4s35
1GTC|1|B|C|31GTC|1|B|C|2s53
1GTC|1|B|C|31GTC|1|B|C|3n0BP
1GTC|1|B|G|11GTC|1|B|C|2s35
1GTC|1|B|G|11GTC|1|B|G|10BPh


Base-PairsCount (0)Relative Frequency
Base-PhosphateCount (2)Relative Frequency
0BPh21.000
Base-StackingCount (2)Relative Frequency
s5321.000

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)