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NDB ID: 1GUC  PDB ID: 1GUC 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1GUC|1|A|A|21GUC|1|A|A|20BPh
1GUC|1|A|A|21GUC|1|A|G|1s53
1GUC|1|A|A|21GUC|1|A|G|3s35
1GUC|1|A|A|21GUC|1|B|C|16s55
1GUC|1|A|A|21GUC|1|B|U|15cWW
1GUC|1|A|C|61GUC|1|A|C|60BPh
1GUC|1|A|C|61GUC|1|A|U|5s53
1GUC|1|A|C|61GUC|1|A|U|7s35
1GUC|1|A|C|61GUC|1|B|G|11cWW
1GUC|1|A|C|61GUC|1|B|G|12s55
1GUC|1|A|C|81GUC|1|A|C|80BPh
1GUC|1|A|C|81GUC|1|A|U|7s53
1GUC|1|A|C|81GUC|1|B|A|10s55
1GUC|1|A|C|81GUC|1|B|G|9cWW
1GUC|1|A|G|11GUC|1|A|A|2s35
1GUC|1|A|G|11GUC|1|B|C|16cWW
1GUC|1|A|G|31GUC|1|A|A|2s53
1GUC|1|A|G|31GUC|1|A|G|30BPh
1GUC|1|A|G|31GUC|1|A|G|4s35
1GUC|1|A|G|31GUC|1|B|C|14cWW
1GUC|1|A|G|31GUC|1|B|U|15s55
1GUC|1|A|G|41GUC|1|A|G|3s53
1GUC|1|A|G|41GUC|1|A|G|40BPh
1GUC|1|A|G|41GUC|1|A|U|5s35
1GUC|1|A|G|41GUC|1|B|C|14s55
1GUC|1|A|G|41GUC|1|B|U|13cWW
1GUC|1|A|U|51GUC|1|A|C|6s35
1GUC|1|A|U|51GUC|1|A|G|4s53
1GUC|1|A|U|51GUC|1|A|U|50BPh
1GUC|1|A|U|51GUC|1|B|G|12cWW
1GUC|1|A|U|71GUC|1|A|C|6s53
1GUC|1|A|U|71GUC|1|A|C|8s35
1GUC|1|A|U|71GUC|1|A|U|70BPh
1GUC|1|A|U|71GUC|1|B|A|10cWW
1GUC|1|A|U|71GUC|1|B|G|11s55
1GUC|1|B|A|101GUC|1|A|C|8s55
1GUC|1|B|A|101GUC|1|A|U|7cWW
1GUC|1|B|A|101GUC|1|B|A|100BPh
1GUC|1|B|A|101GUC|1|B|G|11s35
1GUC|1|B|A|101GUC|1|B|G|9s53
1GUC|1|B|C|141GUC|1|A|G|3cWW
1GUC|1|B|C|141GUC|1|A|G|4s55
1GUC|1|B|C|141GUC|1|B|C|140BPh
1GUC|1|B|C|141GUC|1|B|U|13s53
1GUC|1|B|C|141GUC|1|B|U|15s35
1GUC|1|B|C|161GUC|1|A|A|2s55
1GUC|1|B|C|161GUC|1|A|G|1cWW
1GUC|1|B|C|161GUC|1|B|C|160BPh
1GUC|1|B|C|161GUC|1|B|U|15s53
1GUC|1|B|G|111GUC|1|A|C|6cWW
1GUC|1|B|G|111GUC|1|A|U|7s55
1GUC|1|B|G|111GUC|1|B|A|10s53
1GUC|1|B|G|111GUC|1|B|G|110BPh
1GUC|1|B|G|111GUC|1|B|G|12s35
1GUC|1|B|G|121GUC|1|A|C|6s55
1GUC|1|B|G|121GUC|1|A|U|5cWW
1GUC|1|B|G|121GUC|1|B|G|11s53
1GUC|1|B|G|121GUC|1|B|G|120BPh
1GUC|1|B|G|121GUC|1|B|U|13s35
1GUC|1|B|G|91GUC|1|A|C|8cWW
1GUC|1|B|G|91GUC|1|B|A|10s35
1GUC|1|B|U|131GUC|1|A|G|4cWW
1GUC|1|B|U|131GUC|1|B|C|14s35
1GUC|1|B|U|131GUC|1|B|G|12s53
1GUC|1|B|U|131GUC|1|B|U|130BPh
1GUC|1|B|U|151GUC|1|A|A|2cWW
1GUC|1|B|U|151GUC|1|A|G|3s55
1GUC|1|B|U|151GUC|1|B|C|14s53
1GUC|1|B|U|151GUC|1|B|C|16s35
1GUC|1|B|U|151GUC|1|B|U|150BPh


Base-PairsCount (8)Relative Frequency
cWW81.000
Base-PhosphateCount (14)Relative Frequency
0BPh141.000
Base-StackingCount (12)Relative Frequency
s5360.500
s5560.500

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)