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As of 1-Apr-2020 number of released structures: 10687
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NDB ID: PR0237  PDB ID: 1H2C 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1H2C|1|R|A|31H2C|1|R|A|3n0BP
1H2C|1|R|A|31H2C|1|R|G|2n7BP
1H2C|1|R|A|3||||2_5551H2C|1|R|A|3||||2_555n0BP
1H2C|1|R|A|3||||2_5551H2C|1|R|G|2||||2_555n7BP
1H2C|1|R|A|3||||3_5551H2C|1|R|A|3||||3_555n0BP
1H2C|1|R|A|3||||3_5551H2C|1|R|G|2||||3_555n7BP
1H2C|1|R|A|3||||4_5551H2C|1|R|A|3||||4_555n0BP
1H2C|1|R|A|3||||4_5551H2C|1|R|G|2||||4_555n7BP
1H2C|1|R|A|3||||5_5561H2C|1|R|A|3||||5_556n0BP
1H2C|1|R|A|3||||5_5561H2C|1|R|G|2||||5_556n7BP
1H2C|1|R|A|3||||6_5561H2C|1|R|A|3||||6_556n0BP
1H2C|1|R|A|3||||6_5561H2C|1|R|G|2||||6_556n7BP
1H2C|1|R|A|3||||7_5561H2C|1|R|A|3||||7_556n0BP
1H2C|1|R|A|3||||7_5561H2C|1|R|G|2||||7_556n7BP
1H2C|1|R|A|3||||8_5561H2C|1|R|A|3||||8_556n0BP
1H2C|1|R|A|3||||8_5561H2C|1|R|G|2||||8_556n7BP
1H2C|1|R|G|21H2C|1|R|G|2||||5_556s33
1H2C|1|R|G|2||||2_5551H2C|1|R|G|2||||6_556s33
1H2C|1|R|G|2||||3_5551H2C|1|R|G|2||||8_556s33
1H2C|1|R|G|2||||4_5551H2C|1|R|G|2||||7_556s33
1H2C|1|R|G|2||||5_5561H2C|1|R|G|2s33
1H2C|1|R|G|2||||6_5561H2C|1|R|G|2||||2_555s33
1H2C|1|R|G|2||||7_5561H2C|1|R|G|2||||4_555s33
1H2C|1|R|G|2||||8_5561H2C|1|R|G|2||||3_555s33
1H2C|1|R|U|11H2C|1|R|U|1||||8_556s55
1H2C|1|R|U|1||||2_5551H2C|1|R|U|1||||7_556s55
1H2C|1|R|U|1||||3_5551H2C|1|R|U|1||||6_556s55
1H2C|1|R|U|1||||4_5551H2C|1|R|U|1||||5_556s55
1H2C|1|R|U|1||||5_5561H2C|1|R|U|1||||4_555s55
1H2C|1|R|U|1||||6_5561H2C|1|R|U|1||||3_555s55
1H2C|1|R|U|1||||7_5561H2C|1|R|U|1||||2_555s55
1H2C|1|R|U|1||||8_5561H2C|1|R|U|1s55


Base-PairsCount (0)Relative Frequency
Base-PhosphateCount (0)Relative Frequency
Base-StackingCount (8)Relative Frequency
s3340.500
s5540.500

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)