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NDB ID: PH0018  PDB ID: 1H38 

RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1H38|1|F|A|71H38|1|F|A|70BPh
1H38|1|F|A|71H38|1|F|G|6s53
1H38|1|F|A|71H38|1|F|U|8s35
1H38|1|F|C|21H38|1|F|C|20BPh
1H38|1|F|C|21H38|1|F|G|1s53
1H38|1|F|C|21H38|1|F|G|3s35
1H38|1|F|C|51H38|1|F|C|50BPh
1H38|1|F|C|51H38|1|F|G|4s53
1H38|1|F|C|51H38|1|F|G|6s35
1H38|1|F|G|11H38|1|F|C|2s35
1H38|1|F|G|11H38|1|F|G|10BPh
1H38|1|F|G|31H38|1|F|C|2s53
1H38|1|F|G|31H38|1|F|G|30BPh
1H38|1|F|G|31H38|1|F|G|4s35
1H38|1|F|G|41H38|1|F|C|5s35
1H38|1|F|G|41H38|1|F|G|3s53
1H38|1|F|G|41H38|1|F|G|40BPh
1H38|1|F|G|61H38|1|F|A|7s35
1H38|1|F|G|61H38|1|F|C|5s53
1H38|1|F|G|61H38|1|F|G|60BPh
1H38|1|F|U|81H38|1|F|A|7s53
1H38|1|F|U|81H38|1|F|U|80BPh
1H38|1|I|A|71H38|1|I|A|70BPh
1H38|1|I|A|71H38|1|I|G|6s53
1H38|1|I|A|71H38|1|I|U|8s35
1H38|1|I|C|21H38|1|I|C|20BPh
1H38|1|I|C|21H38|1|I|G|1s53
1H38|1|I|C|21H38|1|I|G|3s35
1H38|1|I|C|51H38|1|I|C|50BPh
1H38|1|I|C|51H38|1|I|G|4s53
1H38|1|I|C|51H38|1|I|G|6s35
1H38|1|I|G|11H38|1|I|C|2s35
1H38|1|I|G|11H38|1|I|G|10BPh
1H38|1|I|G|31H38|1|I|C|2s53
1H38|1|I|G|31H38|1|I|G|30BPh
1H38|1|I|G|31H38|1|I|G|4s35
1H38|1|I|G|41H38|1|I|C|5s35
1H38|1|I|G|41H38|1|I|G|3s53
1H38|1|I|G|41H38|1|I|G|40BPh
1H38|1|I|G|61H38|1|I|A|7s35
1H38|1|I|G|61H38|1|I|C|5s53
1H38|1|I|G|61H38|1|I|G|60BPh
1H38|1|I|U|81H38|1|I|A|7s53
1H38|1|I|U|81H38|1|I|U|80BPh
1H38|1|L|A|71H38|1|L|A|70BPh
1H38|1|L|A|71H38|1|L|G|6s53
1H38|1|L|A|71H38|1|L|U|8s35
1H38|1|L|C|21H38|1|L|C|20BPh
1H38|1|L|C|21H38|1|L|G|1s53
1H38|1|L|C|21H38|1|L|G|3s35
1H38|1|L|C|51H38|1|L|C|50BPh
1H38|1|L|C|51H38|1|L|G|4s53
1H38|1|L|C|51H38|1|L|G|6s35
1H38|1|L|G|11H38|1|L|C|2s35
1H38|1|L|G|11H38|1|L|G|10BPh
1H38|1|L|G|31H38|1|L|C|2s53
1H38|1|L|G|31H38|1|L|G|30BPh
1H38|1|L|G|31H38|1|L|G|4s35
1H38|1|L|G|41H38|1|L|C|5s35
1H38|1|L|G|41H38|1|L|G|3s53
1H38|1|L|G|41H38|1|L|G|40BPh
1H38|1|L|G|61H38|1|L|A|7s35
1H38|1|L|G|61H38|1|L|C|5s53
1H38|1|L|G|61H38|1|L|G|60BPh
1H38|1|L|U|81H38|1|L|A|7s53
1H38|1|L|U|81H38|1|L|U|80BPh
1H38|1|O|A|71H38|1|O|A|70BPh
1H38|1|O|A|71H38|1|O|G|6s53
1H38|1|O|A|71H38|1|O|U|8s35
1H38|1|O|C|21H38|1|O|C|20BPh
1H38|1|O|C|21H38|1|O|G|1s53
1H38|1|O|C|21H38|1|O|G|3s35
1H38|1|O|C|51H38|1|O|C|50BPh
1H38|1|O|C|51H38|1|O|G|4s53
1H38|1|O|C|51H38|1|O|G|6s35
1H38|1|O|G|11H38|1|O|C|2s35
1H38|1|O|G|11H38|1|O|G|10BPh
1H38|1|O|G|31H38|1|O|C|2s53
1H38|1|O|G|31H38|1|O|G|30BPh
1H38|1|O|G|31H38|1|O|G|4s35
1H38|1|O|G|41H38|1|O|C|5s35
1H38|1|O|G|41H38|1|O|G|3s53
1H38|1|O|G|41H38|1|O|G|40BPh
1H38|1|O|G|61H38|1|O|A|7s35
1H38|1|O|G|61H38|1|O|C|5s53
1H38|1|O|G|61H38|1|O|G|60BPh
1H38|1|O|U|81H38|1|O|A|7s53
1H38|1|O|U|81H38|1|O|U|80BPh


Base-PairsCount (0)Relative Frequency
Base-PhosphateCount (32)Relative Frequency
0BPh321.000
Base-StackingCount (12)Relative Frequency
s53121.000

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)

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