A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077
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NDB ID: 1HS4  PDB ID: 1HS4 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1HS4|1|A|A|131HS4|1|A|A|130BPh
1HS4|1|A|A|131HS4|1|A|C|12s53
1HS4|1|A|A|131HS4|1|A|G|1s55n2BP
1HS4|1|A|A|61HS4|1|A|A|60BPh
1HS4|1|A|A|61HS4|1|A|A|7s35
1HS4|1|A|A|71HS4|1|A|A|6s53
1HS4|1|A|A|71HS4|1|A|A|70BPh
1HS4|1|A|A|81HS4|1|A|A|8n0BP
1HS4|1|A|C|101HS4|1|A|C|100BPh
1HS4|1|A|C|101HS4|1|A|G|11s35
1HS4|1|A|C|101HS4|1|A|G|3cWW
1HS4|1|A|C|101HS4|1|A|U|9s53
1HS4|1|A|C|121HS4|1|A|A|13s35
1HS4|1|A|C|121HS4|1|A|C|120BPh
1HS4|1|A|C|121HS4|1|A|G|1cWW
1HS4|1|A|C|121HS4|1|A|G|11s53
1HS4|1|A|C|21HS4|1|A|C|20BPh
1HS4|1|A|C|21HS4|1|A|G|1s53
1HS4|1|A|C|21HS4|1|A|G|11cWW
1HS4|1|A|C|21HS4|1|A|G|3s35
1HS4|1|A|G|11HS4|1|A|A|13s55
1HS4|1|A|G|11HS4|1|A|C|12cWW
1HS4|1|A|G|11HS4|1|A|C|2s35
1HS4|1|A|G|111HS4|1|A|C|10s53
1HS4|1|A|G|111HS4|1|A|C|12s35
1HS4|1|A|G|111HS4|1|A|C|2cWW
1HS4|1|A|G|111HS4|1|A|G|110BPh
1HS4|1|A|G|111HS4|1|A|G|3s55
1HS4|1|A|G|31HS4|1|A|C|10cWW
1HS4|1|A|G|31HS4|1|A|C|2s53
1HS4|1|A|G|31HS4|1|A|G|11s55
1HS4|1|A|G|31HS4|1|A|G|3n0BP
1HS4|1|A|G|31HS4|1|A|U|4s35
1HS4|1|A|U|41HS4|1|A|G|3s53
1HS4|1|A|U|41HS4|1|A|U|40BPh
1HS4|1|A|U|41HS4|1|A|U|5s35
1HS4|1|A|U|41HS4|1|A|U|9cWW
1HS4|1|A|U|51HS4|1|A|A|85BPh
1HS4|1|A|U|51HS4|1|A|U|4s53
1HS4|1|A|U|51HS4|1|A|U|50BPh
1HS4|1|A|U|51HS4|1|A|U|9s55
1HS4|1|A|U|91HS4|1|A|A|8
1HS4|1|A|U|91HS4|1|A|C|10s35
1HS4|1|A|U|91HS4|1|A|U|4cWW
1HS4|1|A|U|91HS4|1|A|U|5s55
1HS4|1|A|U|91HS4|1|A|U|9n0BP


Base-PairsCount (4)Relative Frequency
cWW41.000
Base-PhosphateCount (10)Relative Frequency
5BPh10.100
0BPh90.900
Base-StackingCount (7)Relative Frequency
s5340.571
s5530.429

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)