A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077
Search for released structures

NDB ID: 1HS8  PDB ID: 1HS8 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1HS8|1|A|A|131HS8|1|A|A|130BPh
1HS8|1|A|A|131HS8|1|A|C|12s53
1HS8|1|A|A|131HS8|1|A|G|1s55
1HS8|1|A|A|61HS8|1|A|A|6n0BP
1HS8|1|A|A|61HS8|1|A|A|7s35
1HS8|1|A|A|71HS8|1|A|A|6s53
1HS8|1|A|A|71HS8|1|A|A|70BPh
1HS8|1|A|A|71HS8|1|A|U|9ns35
1HS8|1|A|C|101HS8|1|A|C|100BPh
1HS8|1|A|C|101HS8|1|A|G|11s35
1HS8|1|A|C|101HS8|1|A|G|3cWW
1HS8|1|A|C|101HS8|1|A|U|9s53
1HS8|1|A|C|121HS8|1|A|A|13s35
1HS8|1|A|C|121HS8|1|A|C|120BPh
1HS8|1|A|C|121HS8|1|A|G|1cWW
1HS8|1|A|C|121HS8|1|A|G|11s53
1HS8|1|A|C|21HS8|1|A|C|20BPh
1HS8|1|A|C|21HS8|1|A|G|1s53
1HS8|1|A|C|21HS8|1|A|G|11cWW
1HS8|1|A|C|21HS8|1|A|G|3s35
1HS8|1|A|C|51HS8|1|A|C|50BPh
1HS8|1|A|C|51HS8|1|A|U|4s53
1HS8|1|A|C|51HS8|1|A|U|86BPh
1HS8|1|A|C|51HS8|1|A|U|9s55
1HS8|1|A|G|11HS8|1|A|A|13s55
1HS8|1|A|G|11HS8|1|A|C|12cWW
1HS8|1|A|G|11HS8|1|A|C|2s35
1HS8|1|A|G|111HS8|1|A|C|10s53
1HS8|1|A|G|111HS8|1|A|C|12s35
1HS8|1|A|G|111HS8|1|A|C|2cWW
1HS8|1|A|G|111HS8|1|A|G|110BPh
1HS8|1|A|G|111HS8|1|A|G|3s55
1HS8|1|A|G|31HS8|1|A|C|10cWW
1HS8|1|A|G|31HS8|1|A|C|2s53
1HS8|1|A|G|31HS8|1|A|G|11s55
1HS8|1|A|G|31HS8|1|A|G|3n0BP
1HS8|1|A|G|31HS8|1|A|U|4s35
1HS8|1|A|U|41HS8|1|A|C|5s35
1HS8|1|A|U|41HS8|1|A|G|3s53
1HS8|1|A|U|41HS8|1|A|U|40BPh
1HS8|1|A|U|41HS8|1|A|U|9cWW
1HS8|1|A|U|81HS8|1|A|U|8n0BP
1HS8|1|A|U|91HS8|1|A|A|7ns53
1HS8|1|A|U|91HS8|1|A|C|10s35
1HS8|1|A|U|91HS8|1|A|C|5s55
1HS8|1|A|U|91HS8|1|A|U|4cWW
1HS8|1|A|U|91HS8|1|A|U|8
1HS8|1|A|U|91HS8|1|A|U|9n0BP


Base-PairsCount (4)Relative Frequency
cWW41.000
Base-PhosphateCount (9)Relative Frequency
6BPh10.111
0BPh80.889
Base-StackingCount (8)Relative Frequency
s5350.625
s5530.375

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)