NDB ID: 1I4B PDB ID: 1I4B 
RNA Base-Pairs, Stacking and other pairwise interactions
CSV FormatNucleotide 1 | Nucleotide 2 | Base-Pairs | Base-Stacking | Base-Phosphate |
---|
1I4B|1|A|A|11 | 1I4B|1|A|A|11 | | | n0BP |
1I4B|1|A|A|11 | 1I4B|1|A|C|10 | | s53 | |
1I4B|1|A|A|11 | 1I4B|1|A|C|12 | | s35 | |
1I4B|1|A|A|11 | 1I4B|1|A|G|4 | | s55 | |
1I4B|1|A|A|11 | 1I4B|1|A|U|3 | cWW | | |
1I4B|1|A|A|8 | 1I4B|1|A|C|5 | | s33 | |
1I4B|1|A|A|8 | 1I4B|1|A|G|9 | | ns35 | |
1I4B|1|A|A|8 | 1I4B|1|A|U|6 | | | |
1I4B|1|A|A|8 | 1I4B|1|A|U|7 | | | n2BP |
1I4B|1|A|C|10 | 1I4B|1|A|A|11 | | s35 | |
1I4B|1|A|C|10 | 1I4B|1|A|C|10 | | | 0BPh |
1I4B|1|A|C|10 | 1I4B|1|A|G|4 | cWW | | |
1I4B|1|A|C|10 | 1I4B|1|A|G|9 | | s53 | |
1I4B|1|A|C|12 | 1I4B|1|A|A|11 | | s53 | |
1I4B|1|A|C|12 | 1I4B|1|A|C|12 | | | 0BPh |
1I4B|1|A|C|12 | 1I4B|1|A|C|13 | | s35 | |
1I4B|1|A|C|12 | 1I4B|1|A|G|2 | cWW | | |
1I4B|1|A|C|13 | 1I4B|1|A|C|12 | | s53 | |
1I4B|1|A|C|13 | 1I4B|1|A|C|13 | | | 0BPh |
1I4B|1|A|C|13 | 1I4B|1|A|G|1 | cWW | | |
1I4B|1|A|C|13 | 1I4B|1|A|G|2 | | ns55 | |
1I4B|1|A|C|5 | 1I4B|1|A|A|8 | | s33 | |
1I4B|1|A|C|5 | 1I4B|1|A|C|5 | | | n0BP |
1I4B|1|A|C|5 | 1I4B|1|A|G|4 | | s53 | |
1I4B|1|A|C|5 | 1I4B|1|A|G|9 | cWW | | |
1I4B|1|A|G|1 | 1I4B|1|A|C|13 | cWW | | |
1I4B|1|A|G|1 | 1I4B|1|A|G|1 | | | 0BPh |
1I4B|1|A|G|1 | 1I4B|1|A|G|2 | | s35 | |
1I4B|1|A|G|2 | 1I4B|1|A|C|12 | cWW | | |
1I4B|1|A|G|2 | 1I4B|1|A|C|13 | | ns55 | |
1I4B|1|A|G|2 | 1I4B|1|A|G|1 | | s53 | |
1I4B|1|A|G|2 | 1I4B|1|A|G|2 | | | 0BPh |
1I4B|1|A|G|2 | 1I4B|1|A|U|3 | | s35 | |
1I4B|1|A|G|4 | 1I4B|1|A|A|11 | | s55 | |
1I4B|1|A|G|4 | 1I4B|1|A|C|10 | cWW | | |
1I4B|1|A|G|4 | 1I4B|1|A|C|5 | | s35 | |
1I4B|1|A|G|4 | 1I4B|1|A|G|4 | | | 0BPh |
1I4B|1|A|G|4 | 1I4B|1|A|G|9 | | ns33 | |
1I4B|1|A|G|4 | 1I4B|1|A|U|3 | | s53 | |
1I4B|1|A|G|9 | 1I4B|1|A|A|8 | | ns53 | |
1I4B|1|A|G|9 | 1I4B|1|A|C|10 | | s35 | |
1I4B|1|A|G|9 | 1I4B|1|A|C|5 | cWW | | |
1I4B|1|A|G|9 | 1I4B|1|A|G|4 | | ns33 | |
1I4B|1|A|G|9 | 1I4B|1|A|G|9 | | | n0BP |
1I4B|1|A|G|9 | 1I4B|1|A|U|7 | | | |
1I4B|1|A|U|3 | 1I4B|1|A|A|11 | cWW | | |
1I4B|1|A|U|3 | 1I4B|1|A|G|2 | | s53 | |
1I4B|1|A|U|3 | 1I4B|1|A|G|4 | | s35 | |
1I4B|1|A|U|3 | 1I4B|1|A|U|3 | | | 0BPh |
1I4B|1|A|U|6 | 1I4B|1|A|C|5 | | | |
1I4B|1|A|U|6 | 1I4B|1|A|U|6 | | | 0BPh |
1I4B|1|A|U|7 | 1I4B|1|A|G|9 | | | |
1I4B|1|A|U|7 | 1I4B|1|A|U|7 | | | 0BPh |
Base-Pairs | Count (5) | Relative Frequency |
---|
cWW | 5 | 1.000 |
Base-Phosphate | Count (9) | Relative Frequency |
---|
0BPh | 9 | 1.000 |
Base-Stacking | Count (6) | Relative Frequency |
---|
s33 | 1 | 0.167 |
s53 | 4 | 0.667 |
s55 | 1 | 0.167 |