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As of 18-May-2022 number of released structures: 12082
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NDB ID: 1IE1  PDB ID: 1IE1 

RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1IE1|1|A|A|141IE1|1|A|A|140BPh
1IE1|1|A|A|141IE1|1|A|A|8s33
1IE1|1|A|A|141IE1|1|A|G|13
1IE1|1|A|A|141IE1|1|A|U|9ns55
1IE1|1|A|A|151IE1|1|A|A|14
1IE1|1|A|A|151IE1|1|A|A|6s53
1IE1|1|A|A|151IE1|1|A|A|7ntHH
1IE1|1|A|A|151IE1|1|A|A|8s35
1IE1|1|A|A|151IE1|1|A|U|17s55
1IE1|1|A|A|181IE1|1|A|A|180BPh
1IE1|1|A|A|181IE1|1|A|A|6s55
1IE1|1|A|A|181IE1|1|A|G|19s35
1IE1|1|A|A|181IE1|1|A|G|5tHS
1IE1|1|A|A|181IE1|1|A|U|17s53
1IE1|1|A|A|61IE1|1|A|A|15s35
1IE1|1|A|A|61IE1|1|A|A|18s55
1IE1|1|A|A|61IE1|1|A|A|7s35
1IE1|1|A|A|61IE1|1|A|G|5
1IE1|1|A|A|61IE1|1|A|U|17tHW
1IE1|1|A|A|71IE1|1|A|A|15ntHH
1IE1|1|A|A|71IE1|1|A|A|6s53
1IE1|1|A|A|71IE1|1|A|A|70BPh
1IE1|1|A|A|71IE1|1|A|A|8s35
1IE1|1|A|A|81IE1|1|A|A|14s33
1IE1|1|A|A|81IE1|1|A|A|15s53
1IE1|1|A|A|81IE1|1|A|A|7s53
1IE1|1|A|A|81IE1|1|A|A|8n0BP
1IE1|1|A|A|81IE1|1|A|C|10ncSH
1IE1|1|A|A|81IE1|1|A|U|9ns35
1IE1|1|A|C|101IE1|1|A|A|8ncHS
1IE1|1|A|C|101IE1|1|A|C|100BPh
1IE1|1|A|C|101IE1|1|A|U|9n7BP
1IE1|1|A|C|111IE1|1|A|C|12
1IE1|1|A|C|121IE1|1|A|C|11
1IE1|1|A|C|211IE1|1|A|C|22s35
1IE1|1|A|C|211IE1|1|A|G|2cWW
1IE1|1|A|C|211IE1|1|A|G|20s53
1IE1|1|A|C|221IE1|1|A|C|21s53
1IE1|1|A|C|221IE1|1|A|C|220BPh
1IE1|1|A|C|221IE1|1|A|G|1cWW
1IE1|1|A|C|221IE1|1|A|G|2s55
1IE1|1|A|C|31IE1|1|A|C|3n0BP
1IE1|1|A|C|31IE1|1|A|C|4s35
1IE1|1|A|C|31IE1|1|A|G|2s53
1IE1|1|A|C|31IE1|1|A|G|20cWW
1IE1|1|A|C|41IE1|1|A|C|3s53
1IE1|1|A|C|41IE1|1|A|C|4n0BP
1IE1|1|A|C|41IE1|1|A|G|19cWW
1IE1|1|A|C|41IE1|1|A|G|20s55
1IE1|1|A|C|41IE1|1|A|G|5s35
1IE1|1|A|G|11IE1|1|A|C|22cWW
1IE1|1|A|G|11IE1|1|A|G|1n0BP
1IE1|1|A|G|11IE1|1|A|G|2s35
1IE1|1|A|G|131IE1|1|A|A|14
1IE1|1|A|G|131IE1|1|A|C|12
1IE1|1|A|G|161IE1|1|A|A|63BPh
1IE1|1|A|G|161IE1|1|A|G|5s33
1IE1|1|A|G|161IE1|1|A|U|17cSH
1IE1|1|A|G|191IE1|1|A|A|18s53
1IE1|1|A|G|191IE1|1|A|C|4cWW
1IE1|1|A|G|191IE1|1|A|G|190BPh
1IE1|1|A|G|191IE1|1|A|G|20s35
1IE1|1|A|G|191IE1|1|A|G|5s55
1IE1|1|A|G|21IE1|1|A|C|21cWW
1IE1|1|A|G|21IE1|1|A|C|22s55
1IE1|1|A|G|21IE1|1|A|C|3s35
1IE1|1|A|G|21IE1|1|A|G|1s53
1IE1|1|A|G|201IE1|1|A|C|21s35
1IE1|1|A|G|201IE1|1|A|C|3cWW
1IE1|1|A|G|201IE1|1|A|C|4s55
1IE1|1|A|G|201IE1|1|A|G|19s53
1IE1|1|A|G|51IE1|1|A|A|18tSH
1IE1|1|A|G|51IE1|1|A|C|4s53
1IE1|1|A|G|51IE1|1|A|G|16s33
1IE1|1|A|G|51IE1|1|A|G|19s55
1IE1|1|A|G|51IE1|1|A|G|5n0BP
1IE1|1|A|G|51IE1|1|A|U|17s33
1IE1|1|A|U|171IE1|1|A|A|15s55
1IE1|1|A|U|171IE1|1|A|A|18s35
1IE1|1|A|U|171IE1|1|A|A|6tWH
1IE1|1|A|U|171IE1|1|A|G|16cHS
1IE1|1|A|U|171IE1|1|A|G|5s33
1IE1|1|A|U|171IE1|1|A|U|170BPh
1IE1|1|A|U|91IE1|1|A|A|14ns55
1IE1|1|A|U|91IE1|1|A|A|8ns53
1IE1|1|A|U|91IE1|1|A|C|10


Base-PairsCount (7)Relative Frequency
cWW40.571
tWH10.143
cHS10.143
tHS10.143
Base-PhosphateCount (8)Relative Frequency
3BPh10.125
0BPh70.875
Base-StackingCount (12)Relative Frequency
s3330.250
s5340.333
s5550.417

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)

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