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NDB ID: AH0018  PDB ID: 1IHA 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1IHA|1|A|C|21IHA|1|A|C|20BPh
1IHA|1|A|C|21IHA|1|A|G|1s53
1IHA|1|A|C|21IHA|1|A|U|3s35
1IHA|1|A|C|21IHA|1|B|G|7cWW
1IHA|1|A|C|51IHA|1|A|C|50BPh
1IHA|1|A|C|51IHA|1|A|G|6s35
1IHA|1|A|C|51IHA|1|A|U|4s53
1IHA|1|A|C|51IHA|1|B|U|4cWW
1IHA|1|A|C|81IHA|1|A|C|80BPh
1IHA|1|A|C|81IHA|1|A|G|7s53
1IHA|1|A|C|81IHA|1|B|G|1cWW
1IHA|1|A|G|11IHA|1|A|C|2s35
1IHA|1|A|G|11IHA|1|A|G|10BPh
1IHA|1|A|G|11IHA|1|B|C|8cWW
1IHA|1|A|G|61IHA|1|A|C|5s53
1IHA|1|A|G|61IHA|1|A|G|60BPh
1IHA|1|A|G|61IHA|1|A|G|7s35
1IHA|1|A|G|61IHA|1|B|U|3cWW
1IHA|1|A|G|61IHA|1|B|U|4s55
1IHA|1|A|G|71IHA|1|A|C|8s35
1IHA|1|A|G|71IHA|1|A|G|6s53
1IHA|1|A|G|71IHA|1|A|G|70BPh
1IHA|1|A|G|71IHA|1|B|C|2cWW
1IHA|1|A|G|71IHA|1|B|U|3s55
1IHA|1|A|U|31IHA|1|A|C|2s53
1IHA|1|A|U|31IHA|1|A|U|30BPh
1IHA|1|A|U|31IHA|1|A|U|4ns35
1IHA|1|A|U|31IHA|1|B|G|6cWW
1IHA|1|A|U|31IHA|1|B|G|7s55
1IHA|1|A|U|41IHA|1|A|C|5s35
1IHA|1|A|U|41IHA|1|A|U|3ns53
1IHA|1|A|U|41IHA|1|A|U|40BPh
1IHA|1|A|U|41IHA|1|B|C|5cWW
1IHA|1|A|U|41IHA|1|B|G|6s55
1IHA|1|B|C|21IHA|1|A|G|7cWW
1IHA|1|B|C|21IHA|1|B|C|20BPh
1IHA|1|B|C|21IHA|1|B|G|1s53
1IHA|1|B|C|21IHA|1|B|U|3s35
1IHA|1|B|C|51IHA|1|A|U|4cWW
1IHA|1|B|C|51IHA|1|B|C|50BPh
1IHA|1|B|C|51IHA|1|B|G|6s35
1IHA|1|B|C|51IHA|1|B|U|4s53
1IHA|1|B|C|81IHA|1|A|G|1cWW
1IHA|1|B|C|81IHA|1|B|C|80BPh
1IHA|1|B|C|81IHA|1|B|G|7s53
1IHA|1|B|G|11IHA|1|A|C|8cWW
1IHA|1|B|G|11IHA|1|B|C|2s35
1IHA|1|B|G|11IHA|1|B|G|10BPh
1IHA|1|B|G|61IHA|1|A|U|3cWW
1IHA|1|B|G|61IHA|1|A|U|4s55
1IHA|1|B|G|61IHA|1|B|C|5s53
1IHA|1|B|G|61IHA|1|B|G|6n0BP
1IHA|1|B|G|61IHA|1|B|G|7s35
1IHA|1|B|G|71IHA|1|A|C|2cWW
1IHA|1|B|G|71IHA|1|A|U|3s55
1IHA|1|B|G|71IHA|1|B|C|8s35
1IHA|1|B|G|71IHA|1|B|G|6s53
1IHA|1|B|G|71IHA|1|B|G|70BPh
1IHA|1|B|U|31IHA|1|A|G|6cWW
1IHA|1|B|U|31IHA|1|A|G|7s55
1IHA|1|B|U|31IHA|1|B|C|2s53
1IHA|1|B|U|31IHA|1|B|U|30BPh
1IHA|1|B|U|31IHA|1|B|U|4ns35
1IHA|1|B|U|41IHA|1|A|C|5cWW
1IHA|1|B|U|41IHA|1|A|G|6s55
1IHA|1|B|U|41IHA|1|B|C|5s35
1IHA|1|B|U|41IHA|1|B|U|3ns53
1IHA|1|B|U|41IHA|1|B|U|40BPh


Base-PairsCount (8)Relative Frequency
cWW81.000
Base-PhosphateCount (15)Relative Frequency
0BPh151.000
Base-StackingCount (10)Relative Frequency
s5360.600
s5540.400

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)