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As of 21-Aug-2019 number of released structures: 10343
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NDB ID: AR0033  PDB ID: 1IK5 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1IK5|1|A|A|121IK5|1|A|A|120BPh
1IK5|1|A|A|121IK5|1|A|U|11s53
1IK5|1|A|A|121IK5|1|B|A|18s55
1IK5|1|A|A|121IK5|1|B|U|17cWW
1IK5|1|A|A|41IK5|1|A|A|40BPh
1IK5|1|A|A|41IK5|1|A|U|3s53
1IK5|1|A|A|41IK5|1|A|U|5s35
1IK5|1|A|A|41IK5|1|B|A|26s55
1IK5|1|A|A|41IK5|1|B|U|20tHW
1IK5|1|A|A|41IK5|1|B|U|25cWW
1IK5|1|A|C|141IK5|1|A|C|140BPh
1IK5|1|A|C|141IK5|1|B|G|15cWW
1IK5|1|A|C|141IK5|1|B|G|16s55
1IK5|1|A|C|81IK5|1|A|C|80BPh
1IK5|1|A|C|81IK5|1|A|G|9s35
1IK5|1|A|C|81IK5|1|A|U|5
1IK5|1|A|C|81IK5|1|B|G|23cWW
1IK5|1|A|C|81IK5|1|B|G|24s55
1IK5|1|A|G|11IK5|1|A|G|10BPh
1IK5|1|A|G|11IK5|1|A|G|2s35
1IK5|1|A|G|11IK5|1|B|C|28cWW
1IK5|1|A|G|101IK5|1|A|G|100BPh
1IK5|1|A|G|101IK5|1|A|G|9s53
1IK5|1|A|G|101IK5|1|A|U|11s35
1IK5|1|A|G|101IK5|1|B|U|19cWW
1IK5|1|A|G|101IK5|1|B|U|22s55
1IK5|1|A|G|21IK5|1|A|G|1s53
1IK5|1|A|G|21IK5|1|A|G|20BPh
1IK5|1|A|G|21IK5|1|A|U|3s35
1IK5|1|A|G|21IK5|1|B|C|28s55
1IK5|1|A|G|91IK5|1|A|C|8s53
1IK5|1|A|G|91IK5|1|A|G|10s35
1IK5|1|A|G|91IK5|1|A|G|90BPh
1IK5|1|A|G|91IK5|1|B|G|23s55
1IK5|1|A|G|91IK5|1|B|U|22cWW
1IK5|1|A|U|111IK5|1|A|A|12s35
1IK5|1|A|U|111IK5|1|A|G|10s53
1IK5|1|A|U|111IK5|1|A|U|110BPh
1IK5|1|A|U|111IK5|1|B|A|18cWW
1IK5|1|A|U|31IK5|1|A|A|4s35
1IK5|1|A|U|31IK5|1|A|G|2s53
1IK5|1|A|U|31IK5|1|A|U|30BPh
1IK5|1|A|U|31IK5|1|B|A|26cWW
1IK5|1|A|U|31IK5|1|B|U|20s33
1IK5|1|A|U|51IK5|1|A|A|4s53
1IK5|1|A|U|51IK5|1|A|U|50BPh
1IK5|1|A|U|51IK5|1|B|G|24cWW
1IK5|1|A|U|61IK5|1|B|A|18tWH
1IK5|1|A|U|61IK5|1|B|U|17s33
1IK5|1|A|U|71IK5|1|A|U|70BPh
1IK5|1|A|U|71IK5|1|B|G|15n9BP
1IK5|1|B|A|181IK5|1|A|A|12s55
1IK5|1|B|A|181IK5|1|A|U|11cWW
1IK5|1|B|A|181IK5|1|A|U|6tHW
1IK5|1|B|A|181IK5|1|B|A|180BPh
1IK5|1|B|A|181IK5|1|B|U|17s53
1IK5|1|B|A|181IK5|1|B|U|19s35
1IK5|1|B|A|261IK5|1|A|A|4s55
1IK5|1|B|A|261IK5|1|A|U|3cWW
1IK5|1|B|A|261IK5|1|B|U|25s53
1IK5|1|B|C|281IK5|1|A|G|1cWW
1IK5|1|B|C|281IK5|1|A|G|2s55
1IK5|1|B|C|281IK5|1|B|C|280BPh
1IK5|1|B|G|151IK5|1|A|C|14cWW
1IK5|1|B|G|151IK5|1|B|G|15n0BP
1IK5|1|B|G|151IK5|1|B|G|16s35
1IK5|1|B|G|161IK5|1|A|C|14s55
1IK5|1|B|G|161IK5|1|B|G|15s53
1IK5|1|B|G|161IK5|1|B|G|160BPh
1IK5|1|B|G|161IK5|1|B|U|17s35
1IK5|1|B|G|231IK5|1|A|C|8cWW
1IK5|1|B|G|231IK5|1|A|G|9s55
1IK5|1|B|G|231IK5|1|B|G|230BPh
1IK5|1|B|G|231IK5|1|B|G|24s35
1IK5|1|B|G|231IK5|1|B|U|22ns53
1IK5|1|B|G|241IK5|1|A|C|8s55
1IK5|1|B|G|241IK5|1|A|U|5cWW
1IK5|1|B|G|241IK5|1|B|G|23s53
1IK5|1|B|G|241IK5|1|B|G|240BPh
1IK5|1|B|G|241IK5|1|B|U|25s35
1IK5|1|B|U|171IK5|1|A|A|12cWW
1IK5|1|B|U|171IK5|1|A|U|6s33
1IK5|1|B|U|171IK5|1|B|A|18s35
1IK5|1|B|U|171IK5|1|B|G|16s53
1IK5|1|B|U|171IK5|1|B|U|170BPh
1IK5|1|B|U|191IK5|1|A|G|10cWW
1IK5|1|B|U|191IK5|1|B|A|18s53
1IK5|1|B|U|191IK5|1|B|U|190BPh
1IK5|1|B|U|201IK5|1|A|A|4tWH
1IK5|1|B|U|201IK5|1|A|U|3s33n9BP
1IK5|1|B|U|201IK5|1|B|U|20n0BP
1IK5|1|B|U|211IK5|1|B|U|21n0BP
1IK5|1|B|U|221IK5|1|A|G|10s55
1IK5|1|B|U|221IK5|1|A|G|9cWW
1IK5|1|B|U|221IK5|1|B|G|23ns35
1IK5|1|B|U|221IK5|1|B|U|19
1IK5|1|B|U|221IK5|1|B|U|220BPh
1IK5|1|B|U|251IK5|1|A|A|4cWW
1IK5|1|B|U|251IK5|1|B|A|26s35
1IK5|1|B|U|251IK5|1|B|G|24s53
1IK5|1|B|U|251IK5|1|B|U|250BPh


Base-PairsCount (12)Relative Frequency
cWW100.833
tWH20.167
Base-PhosphateCount (21)Relative Frequency
0BPh211.000
Base-StackingCount (14)Relative Frequency
s3320.143
s5350.357
s5570.500

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)