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As of 21-Sep-2022 number of released structures: 12282
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NDB ID: 1IKD  PDB ID: 1IKD 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1IKD|1|A|A|131IKD|1|A|A|130BPh
1IKD|1|A|A|131IKD|1|A|G|12s53
1IKD|1|A|A|131IKD|1|A|G|14s35
1IKD|1|A|A|131IKD|1|A|U|6cWW
1IKD|1|A|A|191IKD|1|A|C|18ns53
1IKD|1|A|A|191IKD|1|A|C|20s35
1IKD|1|A|A|191IKD|1|A|G|1s55
1IKD|1|A|A|221IKD|1|A|A|22n0BP
1IKD|1|A|A|221IKD|1|A|C|21s33
1IKD|1|A|C|101IKD|1|A|C|100BPh
1IKD|1|A|C|101IKD|1|A|G|11s53
1IKD|1|A|C|101IKD|1|A|U|8ns53
1IKD|1|A|C|101IKD|1|A|U|98BPh
1IKD|1|A|C|151IKD|1|A|C|150BPh
1IKD|1|A|C|151IKD|1|A|G|14s53
1IKD|1|A|C|151IKD|1|A|G|4cWW
1IKD|1|A|C|151IKD|1|A|U|16s35
1IKD|1|A|C|171IKD|1|A|C|170BPh
1IKD|1|A|C|171IKD|1|A|C|18s35
1IKD|1|A|C|171IKD|1|A|G|2cWW
1IKD|1|A|C|171IKD|1|A|G|3ns55
1IKD|1|A|C|171IKD|1|A|U|16s53
1IKD|1|A|C|181IKD|1|A|A|19ns35
1IKD|1|A|C|181IKD|1|A|C|17s53
1IKD|1|A|C|181IKD|1|A|C|180BPh
1IKD|1|A|C|181IKD|1|A|G|1cWW
1IKD|1|A|C|181IKD|1|A|G|2ns55
1IKD|1|A|C|201IKD|1|A|A|19s53
1IKD|1|A|C|201IKD|1|A|C|200BPh
1IKD|1|A|C|211IKD|1|A|A|22s33
1IKD|1|A|C|211IKD|1|A|C|210BPh
1IKD|1|A|C|51IKD|1|A|C|50BPh
1IKD|1|A|C|51IKD|1|A|G|14cWW
1IKD|1|A|C|51IKD|1|A|G|4s53
1IKD|1|A|C|51IKD|1|A|U|6s35
1IKD|1|A|C|71IKD|1|A|C|70BPh
1IKD|1|A|C|71IKD|1|A|G|12cWW
1IKD|1|A|C|71IKD|1|A|U|6s53
1IKD|1|A|C|71IKD|1|A|U|8s35
1IKD|1|A|G|11IKD|1|A|A|19s55
1IKD|1|A|G|11IKD|1|A|C|18cWW
1IKD|1|A|G|11IKD|1|A|G|10BPh
1IKD|1|A|G|11IKD|1|A|G|2s35
1IKD|1|A|G|111IKD|1|A|C|10s35
1IKD|1|A|G|111IKD|1|A|G|12s55
1IKD|1|A|G|111IKD|1|A|U|8ntWS
1IKD|1|A|G|111IKD|1|A|U|9
1IKD|1|A|G|121IKD|1|A|A|13s35
1IKD|1|A|G|121IKD|1|A|C|7cWW
1IKD|1|A|G|121IKD|1|A|G|11s55
1IKD|1|A|G|121IKD|1|A|G|12n0BP
1IKD|1|A|G|121IKD|1|A|U|8ns55
1IKD|1|A|G|141IKD|1|A|A|13s53
1IKD|1|A|G|141IKD|1|A|C|15s35
1IKD|1|A|G|141IKD|1|A|C|5cWW
1IKD|1|A|G|141IKD|1|A|G|140BPh
1IKD|1|A|G|141IKD|1|A|U|6s55
1IKD|1|A|G|21IKD|1|A|C|17cWW
1IKD|1|A|G|21IKD|1|A|C|18ns55
1IKD|1|A|G|21IKD|1|A|G|1s53
1IKD|1|A|G|21IKD|1|A|G|20BPh
1IKD|1|A|G|21IKD|1|A|G|3s35
1IKD|1|A|G|31IKD|1|A|C|17ns55
1IKD|1|A|G|31IKD|1|A|G|2s53
1IKD|1|A|G|31IKD|1|A|G|4s35
1IKD|1|A|G|31IKD|1|A|U|16cWW
1IKD|1|A|G|41IKD|1|A|C|15cWW
1IKD|1|A|G|41IKD|1|A|C|5s35
1IKD|1|A|G|41IKD|1|A|G|3s53
1IKD|1|A|G|41IKD|1|A|G|40BPh
1IKD|1|A|U|161IKD|1|A|C|15s53
1IKD|1|A|U|161IKD|1|A|C|17s35
1IKD|1|A|U|161IKD|1|A|G|3cWW
1IKD|1|A|U|161IKD|1|A|U|160BPh
1IKD|1|A|U|61IKD|1|A|A|13cWW
1IKD|1|A|U|61IKD|1|A|C|5s53
1IKD|1|A|U|61IKD|1|A|C|7s35
1IKD|1|A|U|61IKD|1|A|G|14s55
1IKD|1|A|U|61IKD|1|A|U|60BPh
1IKD|1|A|U|81IKD|1|A|C|10ns35
1IKD|1|A|U|81IKD|1|A|C|7s53
1IKD|1|A|U|81IKD|1|A|G|11ntSW
1IKD|1|A|U|81IKD|1|A|G|12ns55
1IKD|1|A|U|81IKD|1|A|U|80BPh
1IKD|1|A|U|91IKD|1|A|G|11
1IKD|1|A|U|91IKD|1|A|U|90BPh


Base-PairsCount (7)Relative Frequency
cWW71.000
Base-PhosphateCount (18)Relative Frequency
8BPh10.056
0BPh170.944
Base-StackingCount (10)Relative Frequency
s3310.100
s5360.600
s5530.300

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)