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As of 18-May-2022 number of released structures: 12082
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NDB ID: PR0092  PDB ID: 1J1U 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1J1U|1|B|A|5091J1U|1|B|A|524tHH6BPh
1J1U|1|B|A|5091J1U|1|B|G|523s53
1J1U|1|B|A|5091J1U|1|B|G|547s55
1J1U|1|B|A|5091J1U|1|B|U|546s33
1J1U|1|B|A|509||||4_5561J1U|1|B|A|524||||4_556tHH6BPh
1J1U|1|B|A|509||||4_5561J1U|1|B|G|523||||4_556s53
1J1U|1|B|A|509||||4_5561J1U|1|B|G|547||||4_556s55
1J1U|1|B|A|509||||4_5561J1U|1|B|U|546||||4_556s33
1J1U|1|B|A|5141J1U|1|B|A|514n0BP
1J1U|1|B|A|5141J1U|1|B|A|522cWS
1J1U|1|B|A|5141J1U|1|B|G|515s35
1J1U|1|B|A|5141J1U|1|B|G|523s55
1J1U|1|B|A|5141J1U|1|B|U|508tHW
1J1U|1|B|A|514||||4_5561J1U|1|B|A|514||||4_556n0BP
1J1U|1|B|A|514||||4_5561J1U|1|B|A|522||||4_556cWS
1J1U|1|B|A|514||||4_5561J1U|1|B|G|515||||4_556s35
1J1U|1|B|A|514||||4_5561J1U|1|B|G|523||||4_556s55
1J1U|1|B|A|514||||4_5561J1U|1|B|U|508||||4_556tHW
1J1U|1|B|A|5221J1U|1|B|A|514cSW
1J1U|1|B|A|5221J1U|1|B|A|522n0BP
1J1U|1|B|A|5221J1U|1|B|C|549s55n6BP
1J1U|1|B|A|5221J1U|1|B|G|547s33
1J1U|1|B|A|5221J1U|1|B|U|508tSS
1J1U|1|B|A|522||||4_5561J1U|1|B|A|514||||4_556cSW
1J1U|1|B|A|522||||4_5561J1U|1|B|A|522||||4_556n0BP
1J1U|1|B|A|522||||4_5561J1U|1|B|C|549||||4_556s55n6BP
1J1U|1|B|A|522||||4_5561J1U|1|B|G|547||||4_556s33
1J1U|1|B|A|522||||4_5561J1U|1|B|U|508||||4_556tSS
1J1U|1|B|A|5241J1U|1|B|A|509tHH
1J1U|1|B|A|5241J1U|1|B|A|5240BPh
1J1U|1|B|A|5241J1U|1|B|A|525s35
1J1U|1|B|A|5241J1U|1|B|G|523s53
1J1U|1|B|A|5241J1U|1|B|U|512cWW
1J1U|1|B|A|524||||4_5561J1U|1|B|A|509||||4_556tHH
1J1U|1|B|A|524||||4_5561J1U|1|B|A|524||||4_5560BPh
1J1U|1|B|A|524||||4_5561J1U|1|B|A|525||||4_556s35
1J1U|1|B|A|524||||4_5561J1U|1|B|G|523||||4_556s53
1J1U|1|B|A|524||||4_5561J1U|1|B|U|512||||4_556cWW
1J1U|1|B|A|5251J1U|1|B|A|524s53
1J1U|1|B|A|5251J1U|1|B|A|5250BPh
1J1U|1|B|A|5251J1U|1|B|C|526s35
1J1U|1|B|A|5251J1U|1|B|U|511cWW
1J1U|1|B|A|5251J1U|1|B|U|512s55
1J1U|1|B|A|525||||4_5561J1U|1|B|A|524||||4_556s53
1J1U|1|B|A|525||||4_5561J1U|1|B|A|525||||4_5560BPh
1J1U|1|B|A|525||||4_5561J1U|1|B|C|526||||4_556s35
1J1U|1|B|A|525||||4_5561J1U|1|B|U|511||||4_556cWW
1J1U|1|B|A|525||||4_5561J1U|1|B|U|512||||4_556s55
1J1U|1|B|A|5321J1U|1|B|A|5320BPh
1J1U|1|B|A|5321J1U|1|B|C|533s35
1J1U|1|B|A|5321J1U|1|B|C|541s55
1J1U|1|B|A|5321J1U|1|B|G|531s53
1J1U|1|B|A|5321J1U|1|B|U|540cWW
1J1U|1|B|A|532||||4_5561J1U|1|B|A|532||||4_5560BPh
1J1U|1|B|A|532||||4_5561J1U|1|B|C|533||||4_556s35
1J1U|1|B|A|532||||4_5561J1U|1|B|C|541||||4_556s55
1J1U|1|B|A|532||||4_5561J1U|1|B|G|531||||4_556s53
1J1U|1|B|A|532||||4_5561J1U|1|B|U|540||||4_556cWW
1J1U|1|B|A|5371J1U|1|B|A|5370BPh
1J1U|1|B|A|5371J1U|1|B|G|538s35
1J1U|1|B|A|5371J1U|1|B|U|534ntHW
1J1U|1|B|A|5371J1U|1|B|U|536s53
1J1U|1|B|A|537||||4_5561J1U|1|B|A|537||||4_5560BPh
1J1U|1|B|A|537||||4_5561J1U|1|B|G|538||||4_556s35
1J1U|1|B|A|537||||4_5561J1U|1|B|U|534||||4_556ntHW
1J1U|1|B|A|537||||4_5561J1U|1|B|U|536||||4_556s53
1J1U|1|B|A|5391J1U|1|B|A|5390BPh
1J1U|1|B|A|5391J1U|1|B|C|533
1J1U|1|B|A|5391J1U|1|B|G|538s53
1J1U|1|B|A|5391J1U|1|B|U|534ns55
1J1U|1|B|A|5391J1U|1|B|U|540s35
1J1U|1|B|A|539||||4_5561J1U|1|B|A|539||||4_5560BPh
1J1U|1|B|A|539||||4_5561J1U|1|B|C|533||||4_556
1J1U|1|B|A|539||||4_5561J1U|1|B|G|538||||4_556s53
1J1U|1|B|A|539||||4_5561J1U|1|B|U|534||||4_556ns55
1J1U|1|B|A|539||||4_5561J1U|1|B|U|540||||4_556s35
1J1U|1|B|A|5451J1U|1|B|A|5450BPh
1J1U|1|B|A|5451J1U|1|B|C|544s53
1J1U|1|B|A|5451J1U|1|B|G|527cWW
1J1U|1|B|A|5451J1U|1|B|G|528s55
1J1U|1|B|A|5451J1U|1|B|U|546s35
1J1U|1|B|A|545||||4_5561J1U|1|B|A|545||||4_5560BPh
1J1U|1|B|A|545||||4_5561J1U|1|B|C|544||||4_556s53
1J1U|1|B|A|545||||4_5561J1U|1|B|G|527||||4_556cWW
1J1U|1|B|A|545||||4_5561J1U|1|B|G|528||||4_556s55
1J1U|1|B|A|545||||4_5561J1U|1|B|U|546||||4_556s35
1J1U|1|B|A|5581J1U|1|B|A|5580BPh
1J1U|1|B|A|5581J1U|1|B|C|557s53
1J1U|1|B|A|5581J1U|1|B|G|519s33
1J1U|1|B|A|5581J1U|1|B|G|520s55
1J1U|1|B|A|5581J1U|1|B|U|556
1J1U|1|B|A|558||||4_5561J1U|1|B|A|558||||4_5560BPh
1J1U|1|B|A|558||||4_5561J1U|1|B|C|557||||4_556s53
1J1U|1|B|A|558||||4_5561J1U|1|B|G|519||||4_556s33
1J1U|1|B|A|558||||4_5561J1U|1|B|G|520||||4_556s55
1J1U|1|B|A|558||||4_5561J1U|1|B|U|556||||4_556
1J1U|1|B|A|5591J1U|1|B|A|559n0BP
1J1U|1|B|A|5591J1U|1|B|C|562s35
1J1U|1|B|A|5591J1U|1|B|G|519s55
1J1U|1|B|A|5591J1U|1|B|U|555tHW
1J1U|1|B|A|5591J1U|1|B|U|561
1J1U|1|B|A|559||||4_5561J1U|1|B|A|559||||4_556n0BP
1J1U|1|B|A|559||||4_5561J1U|1|B|C|562||||4_556s35
1J1U|1|B|A|559||||4_5561J1U|1|B|G|519||||4_556s55
1J1U|1|B|A|559||||4_5561J1U|1|B|U|555||||4_556tHW
1J1U|1|B|A|559||||4_5561J1U|1|B|U|561||||4_556
1J1U|1|B|A|5601J1U|1|B|A|5600BPh
1J1U|1|B|A|5601J1U|1|B|C|516ns35
1J1U|1|B|A|5601J1U|1|B|C|549ns53
1J1U|1|B|A|5601J1U|1|B|G|515s53
1J1U|1|B|A|5601J1U|1|B|U|561s35
1J1U|1|B|A|560||||4_5561J1U|1|B|A|560||||4_5560BPh
1J1U|1|B|A|560||||4_5561J1U|1|B|C|516||||4_556ns35
1J1U|1|B|A|560||||4_5561J1U|1|B|C|549||||4_556ns53
1J1U|1|B|A|560||||4_5561J1U|1|B|G|515||||4_556s53
1J1U|1|B|A|560||||4_5561J1U|1|B|U|561||||4_556s35
1J1U|1|B|C|5011J1U|1|B|C|5010BPh
1J1U|1|B|C|5011J1U|1|B|C|502s35
1J1U|1|B|C|5011J1U|1|B|G|573cWW
1J1U|1|B|C|501||||4_5561J1U|1|B|C|501||||4_5560BPh
1J1U|1|B|C|501||||4_5561J1U|1|B|C|502||||4_556s35
1J1U|1|B|C|501||||4_5561J1U|1|B|G|573||||4_556cWW
1J1U|1|B|C|5021J1U|1|B|C|501s53
1J1U|1|B|C|5021J1U|1|B|C|5020BPh
1J1U|1|B|C|5021J1U|1|B|G|503s35
1J1U|1|B|C|5021J1U|1|B|G|572cWW
1J1U|1|B|C|5021J1U|1|B|G|573s55
1J1U|1|B|C|502||||4_5561J1U|1|B|C|501||||4_556s53
1J1U|1|B|C|502||||4_5561J1U|1|B|C|502||||4_5560BPh
1J1U|1|B|C|502||||4_5561J1U|1|B|G|503||||4_556s35
1J1U|1|B|C|502||||4_5561J1U|1|B|G|572||||4_556cWW
1J1U|1|B|C|502||||4_5561J1U|1|B|G|573||||4_556s55
1J1U|1|B|C|5051J1U|1|B|C|5050BPh
1J1U|1|B|C|5051J1U|1|B|G|504s53
1J1U|1|B|C|5051J1U|1|B|G|506ns35
1J1U|1|B|C|5051J1U|1|B|G|569cWW
1J1U|1|B|C|505||||4_5561J1U|1|B|C|505||||4_5560BPh
1J1U|1|B|C|505||||4_5561J1U|1|B|G|504||||4_556s53
1J1U|1|B|C|505||||4_5561J1U|1|B|G|506||||4_556ns35
1J1U|1|B|C|505||||4_5561J1U|1|B|G|569||||4_556cWW
1J1U|1|B|C|5131J1U|1|B|G|523cWW
1J1U|1|B|C|5131J1U|1|B|U|508s33
1J1U|1|B|C|5131J1U|1|B|U|512s53
1J1U|1|B|C|513||||4_5561J1U|1|B|G|523||||4_556cWW
1J1U|1|B|C|513||||4_5561J1U|1|B|U|508||||4_556s33
1J1U|1|B|C|513||||4_5561J1U|1|B|U|512||||4_556s53
1J1U|1|B|C|5161J1U|1|B|A|560ns53
1J1U|1|B|C|5161J1U|1|B|C|5160BPh
1J1U|1|B|C|5161J1U|1|B|G|515ns539BPh
1J1U|1|B|C|516||||4_5561J1U|1|B|A|560||||4_556ns53
1J1U|1|B|C|516||||4_5561J1U|1|B|C|516||||4_5560BPh
1J1U|1|B|C|516||||4_5561J1U|1|B|G|515||||4_556ns539BPh
1J1U|1|B|C|5171J1U|1|B|C|5169BPh
1J1U|1|B|C|5171J1U|1|B|C|5170BPh
1J1U|1|B|C|5171J1U|1|B|U|518s33
1J1U|1|B|C|517||||4_5561J1U|1|B|C|516||||4_5569BPh
1J1U|1|B|C|517||||4_5561J1U|1|B|C|517||||4_5560BPh
1J1U|1|B|C|517||||4_5561J1U|1|B|U|518||||4_556s33
1J1U|1|B|C|5261J1U|1|B|A|525s53
1J1U|1|B|C|5261J1U|1|B|C|5260BPh
1J1U|1|B|C|5261J1U|1|B|G|510cWW
1J1U|1|B|C|5261J1U|1|B|G|527s35
1J1U|1|B|C|5261J1U|1|B|U|546ncWW
1J1U|1|B|C|526||||4_5561J1U|1|B|A|525||||4_556s53
1J1U|1|B|C|526||||4_5561J1U|1|B|C|526||||4_5560BPh
1J1U|1|B|C|526||||4_5561J1U|1|B|G|510||||4_556cWW
1J1U|1|B|C|526||||4_5561J1U|1|B|G|527||||4_556s35
1J1U|1|B|C|526||||4_5561J1U|1|B|U|546||||4_556ncWW
1J1U|1|B|C|5291J1U|1|B|C|5290BPh
1J1U|1|B|C|5291J1U|1|B|G|528s53
1J1U|1|B|C|5291J1U|1|B|G|530ns35
1J1U|1|B|C|5291J1U|1|B|G|543cWW
1J1U|1|B|C|529||||4_5561J1U|1|B|C|529||||4_5560BPh
1J1U|1|B|C|529||||4_5561J1U|1|B|G|528||||4_556s53
1J1U|1|B|C|529||||4_5561J1U|1|B|G|530||||4_556ns35
1J1U|1|B|C|529||||4_5561J1U|1|B|G|543||||4_556cWW
1J1U|1|B|C|5331J1U|1|B|A|532s53
1J1U|1|B|C|5331J1U|1|B|A|539
1J1U|1|B|C|5331J1U|1|B|C|5330BPh
1J1U|1|B|C|5331J1U|1|B|U|534s35
1J1U|1|B|C|533||||4_5561J1U|1|B|A|532||||4_556s53
1J1U|1|B|C|533||||4_5561J1U|1|B|A|539||||4_556
1J1U|1|B|C|533||||4_5561J1U|1|B|C|533||||4_5560BPh
1J1U|1|B|C|533||||4_5561J1U|1|B|U|534||||4_556s35
1J1U|1|B|C|5411J1U|1|B|A|532s55
1J1U|1|B|C|5411J1U|1|B|C|5410BPh
1J1U|1|B|C|5411J1U|1|B|C|542s35
1J1U|1|B|C|5411J1U|1|B|G|531cWW
1J1U|1|B|C|5411J1U|1|B|U|540s53
1J1U|1|B|C|541||||4_5561J1U|1|B|A|532||||4_556s55
1J1U|1|B|C|541||||4_5561J1U|1|B|C|541||||4_5560BPh
1J1U|1|B|C|541||||4_5561J1U|1|B|C|542||||4_556s35
1J1U|1|B|C|541||||4_5561J1U|1|B|G|531||||4_556cWW
1J1U|1|B|C|541||||4_5561J1U|1|B|U|540||||4_556s53
1J1U|1|B|C|5421J1U|1|B|C|541s53
1J1U|1|B|C|5421J1U|1|B|C|5420BPh
1J1U|1|B|C|5421J1U|1|B|G|530cWW
1J1U|1|B|C|5421J1U|1|B|G|531s55
1J1U|1|B|C|5421J1U|1|B|G|543s35
1J1U|1|B|C|542||||4_5561J1U|1|B|C|541||||4_556s53
1J1U|1|B|C|542||||4_5561J1U|1|B|C|542||||4_5560BPh
1J1U|1|B|C|542||||4_5561J1U|1|B|G|530||||4_556cWW
1J1U|1|B|C|542||||4_5561J1U|1|B|G|531||||4_556s55
1J1U|1|B|C|542||||4_5561J1U|1|B|G|543||||4_556s35
1J1U|1|B|C|5441J1U|1|B|A|545s35
1J1U|1|B|C|5441J1U|1|B|C|5440BPh
1J1U|1|B|C|5441J1U|1|B|G|528cWW
1J1U|1|B|C|5441J1U|1|B|G|543s53
1J1U|1|B|C|544||||4_5561J1U|1|B|A|545||||4_556s35
1J1U|1|B|C|544||||4_5561J1U|1|B|C|544||||4_5560BPh
1J1U|1|B|C|544||||4_5561J1U|1|B|G|528||||4_556cWW
1J1U|1|B|C|544||||4_5561J1U|1|B|G|543||||4_556s53
1J1U|1|B|C|5491J1U|1|B|A|522s55
1J1U|1|B|C|5491J1U|1|B|A|560ns35
1J1U|1|B|C|5491J1U|1|B|C|5490BPh
1J1U|1|B|C|5491J1U|1|B|G|515tWW
1J1U|1|B|C|5491J1U|1|B|U|521
1J1U|1|B|C|549||||4_5561J1U|1|B|A|522||||4_556s55
1J1U|1|B|C|549||||4_5561J1U|1|B|A|560||||4_556ns35
1J1U|1|B|C|549||||4_5561J1U|1|B|C|549||||4_5560BPh
1J1U|1|B|C|549||||4_5561J1U|1|B|G|515||||4_556tWW
1J1U|1|B|C|549||||4_5561J1U|1|B|U|521||||4_556
1J1U|1|B|C|5511J1U|1|B|C|5510BPh
1J1U|1|B|C|5511J1U|1|B|G|550s53
1J1U|1|B|C|5511J1U|1|B|G|565cWW
1J1U|1|B|C|5511J1U|1|B|U|552s35
1J1U|1|B|C|551||||4_5561J1U|1|B|C|551||||4_5560BPh
1J1U|1|B|C|551||||4_5561J1U|1|B|G|550||||4_556s53
1J1U|1|B|C|551||||4_5561J1U|1|B|G|565||||4_556cWW
1J1U|1|B|C|551||||4_5561J1U|1|B|U|552||||4_556s35
1J1U|1|B|C|5571J1U|1|B|A|558s35
1J1U|1|B|C|5571J1U|1|B|C|5570BPh
1J1U|1|B|C|5571J1U|1|B|G|520cWW
1J1U|1|B|C|557||||4_5561J1U|1|B|A|558||||4_556s35
1J1U|1|B|C|557||||4_5561J1U|1|B|C|557||||4_5560BPh
1J1U|1|B|C|557||||4_5561J1U|1|B|G|520||||4_556cWW
1J1U|1|B|C|5621J1U|1|B|A|559s53
1J1U|1|B|C|5621J1U|1|B|C|5620BPh
1J1U|1|B|C|5621J1U|1|B|C|563s35
1J1U|1|B|C|5621J1U|1|B|G|554cWW
1J1U|1|B|C|5621J1U|1|B|U|5618BPh
1J1U|1|B|C|562||||4_5561J1U|1|B|A|559||||4_556s53
1J1U|1|B|C|562||||4_5561J1U|1|B|C|562||||4_5560BPh
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1J1U|1|B|G|554||||4_5561J1U|1|B|G|553||||4_556s53
1J1U|1|B|G|554||||4_5561J1U|1|B|G|554||||4_556n0BP
1J1U|1|B|G|554||||4_5561J1U|1|B|U|555||||4_556s35
1J1U|1|B|G|5641J1U|1|B|C|563s53
1J1U|1|B|G|5641J1U|1|B|G|553s55
1J1U|1|B|G|5641J1U|1|B|G|5640BPh
1J1U|1|B|G|5641J1U|1|B|G|565s35
1J1U|1|B|G|5641J1U|1|B|U|552cWW
1J1U|1|B|G|564||||4_5561J1U|1|B|C|563||||4_556s53
1J1U|1|B|G|564||||4_5561J1U|1|B|G|553||||4_556s55
1J1U|1|B|G|564||||4_5561J1U|1|B|G|564||||4_5560BPh
1J1U|1|B|G|564||||4_5561J1U|1|B|G|565||||4_556s35
1J1U|1|B|G|564||||4_5561J1U|1|B|U|552||||4_556cWW
1J1U|1|B|G|5651J1U|1|B|C|551cWW
1J1U|1|B|G|5651J1U|1|B|C|566s35
1J1U|1|B|G|5651J1U|1|B|G|564s53
1J1U|1|B|G|5651J1U|1|B|G|5650BPh
1J1U|1|B|G|5651J1U|1|B|U|552s55
1J1U|1|B|G|565||||4_5561J1U|1|B|C|551||||4_556cWW
1J1U|1|B|G|565||||4_5561J1U|1|B|C|566||||4_556s35
1J1U|1|B|G|565||||4_5561J1U|1|B|G|564||||4_556s53
1J1U|1|B|G|565||||4_5561J1U|1|B|G|565||||4_5560BPh
1J1U|1|B|G|565||||4_5561J1U|1|B|U|552||||4_556s55
1J1U|1|B|G|5691J1U|1|B|C|505cWW
1J1U|1|B|G|5691J1U|1|B|C|568s53
1J1U|1|B|G|5691J1U|1|B|C|570s35
1J1U|1|B|G|5691J1U|1|B|G|506s55
1J1U|1|B|G|5691J1U|1|B|G|5690BPh
1J1U|1|B|G|569||||4_5561J1U|1|B|C|505||||4_556cWW
1J1U|1|B|G|569||||4_5561J1U|1|B|C|568||||4_556s53
1J1U|1|B|G|569||||4_5561J1U|1|B|C|570||||4_556s35
1J1U|1|B|G|569||||4_5561J1U|1|B|G|506||||4_556s55
1J1U|1|B|G|569||||4_5561J1U|1|B|G|569||||4_5560BPh
1J1U|1|B|G|5721J1U|1|B|C|502cWW
1J1U|1|B|G|5721J1U|1|B|C|571s53
1J1U|1|B|G|5721J1U|1|B|G|503s55
1J1U|1|B|G|5721J1U|1|B|G|5720BPh
1J1U|1|B|G|5721J1U|1|B|G|573s35
1J1U|1|B|G|572||||4_5561J1U|1|B|C|502||||4_556cWW
1J1U|1|B|G|572||||4_5561J1U|1|B|C|571||||4_556s53
1J1U|1|B|G|572||||4_5561J1U|1|B|G|503||||4_556s55
1J1U|1|B|G|572||||4_5561J1U|1|B|G|572||||4_5560BPh
1J1U|1|B|G|572||||4_5561J1U|1|B|G|573||||4_556s35
1J1U|1|B|G|5731J1U|1|B|C|501cWW
1J1U|1|B|G|5731J1U|1|B|C|502s55
1J1U|1|B|G|5731J1U|1|B|G|572s53
1J1U|1|B|G|5731J1U|1|B|G|573n0BP
1J1U|1|B|G|573||||4_5561J1U|1|B|C|501||||4_556cWW
1J1U|1|B|G|573||||4_5561J1U|1|B|C|502||||4_556s55
1J1U|1|B|G|573||||4_5561J1U|1|B|G|572||||4_556s53
1J1U|1|B|G|573||||4_5561J1U|1|B|G|573||||4_556n0BP
1J1U|1|B|U|5081J1U|1|B|A|514tWH
1J1U|1|B|U|5081J1U|1|B|A|522tSS
1J1U|1|B|U|5081J1U|1|B|C|513s33
1J1U|1|B|U|5081J1U|1|B|G|515ns55
1J1U|1|B|U|5081J1U|1|B|U|5080BPh
1J1U|1|B|U|508||||4_5561J1U|1|B|A|514||||4_556tWH
1J1U|1|B|U|508||||4_5561J1U|1|B|A|522||||4_556tSS
1J1U|1|B|U|508||||4_5561J1U|1|B|C|513||||4_556s33
1J1U|1|B|U|508||||4_5561J1U|1|B|G|515||||4_556ns55
1J1U|1|B|U|508||||4_5561J1U|1|B|U|508||||4_5560BPh
1J1U|1|B|U|5111J1U|1|B|A|525cWW
1J1U|1|B|U|5111J1U|1|B|G|510s53
1J1U|1|B|U|5111J1U|1|B|U|5110BPh
1J1U|1|B|U|5111J1U|1|B|U|512s35
1J1U|1|B|U|511||||4_5561J1U|1|B|A|525||||4_556cWW
1J1U|1|B|U|511||||4_5561J1U|1|B|G|510||||4_556s53
1J1U|1|B|U|511||||4_5561J1U|1|B|U|511||||4_5560BPh
1J1U|1|B|U|511||||4_5561J1U|1|B|U|512||||4_556s35
1J1U|1|B|U|5121J1U|1|B|A|524cWW
1J1U|1|B|U|5121J1U|1|B|A|525s55
1J1U|1|B|U|5121J1U|1|B|C|513s35
1J1U|1|B|U|5121J1U|1|B|U|511s53
1J1U|1|B|U|5121J1U|1|B|U|5120BPh
1J1U|1|B|U|512||||4_5561J1U|1|B|A|524||||4_556cWW
1J1U|1|B|U|512||||4_5561J1U|1|B|A|525||||4_556s55
1J1U|1|B|U|512||||4_5561J1U|1|B|C|513||||4_556s35
1J1U|1|B|U|512||||4_5561J1U|1|B|U|511||||4_556s53
1J1U|1|B|U|512||||4_5561J1U|1|B|U|512||||4_5560BPh
1J1U|1|B|U|5181J1U|1|B|C|517s33
1J1U|1|B|U|5181J1U|1|B|U|5180BPh
1J1U|1|B|U|518||||4_5561J1U|1|B|C|517||||4_556s33
1J1U|1|B|U|518||||4_5561J1U|1|B|U|518||||4_5560BPh
1J1U|1|B|U|5211J1U|1|B|A|559n5BP
1J1U|1|B|U|5211J1U|1|B|U|521n0BP
1J1U|1|B|U|521||||4_5561J1U|1|B|A|559||||4_556n5BP
1J1U|1|B|U|521||||4_5561J1U|1|B|U|521||||4_556n0BP
1J1U|1|B|U|5341J1U|1|B|A|537ntWH
1J1U|1|B|U|5341J1U|1|B|A|539ns55
1J1U|1|B|U|5341J1U|1|B|C|533s53
1J1U|1|B|U|5341J1U|1|B|G|538ntWH
1J1U|1|B|U|534||||4_5561J1U|1|B|A|537||||4_556ntWH
1J1U|1|B|U|534||||4_5561J1U|1|B|A|539||||4_556ns55
1J1U|1|B|U|534||||4_5561J1U|1|B|C|533||||4_556s53
1J1U|1|B|U|534||||4_5561J1U|1|B|G|538||||4_556ntWH
1J1U|1|B|U|5361J1U|1|B|A|537s35
1J1U|1|B|U|5361J1U|1|B|U|5360BPh
1J1U|1|B|U|536||||4_5561J1U|1|B|A|537||||4_556s35
1J1U|1|B|U|536||||4_5561J1U|1|B|U|536||||4_5560BPh
1J1U|1|B|U|5401J1U|1|B|A|532cWW
1J1U|1|B|U|5401J1U|1|B|A|539s53n9BP
1J1U|1|B|U|5401J1U|1|B|C|541s35
1J1U|1|B|U|5401J1U|1|B|U|5400BPh
1J1U|1|B|U|540||||4_5561J1U|1|B|A|532||||4_556cWW
1J1U|1|B|U|540||||4_5561J1U|1|B|A|539||||4_556s53n9BP
1J1U|1|B|U|540||||4_5561J1U|1|B|C|541||||4_556s35
1J1U|1|B|U|540||||4_5561J1U|1|B|U|540||||4_5560BPh
1J1U|1|B|U|5461J1U|1|B|A|509s33
1J1U|1|B|U|5461J1U|1|B|A|545s53
1J1U|1|B|U|5461J1U|1|B|C|526ncWW
1J1U|1|B|U|5461J1U|1|B|G|510ncWH
1J1U|1|B|U|5461J1U|1|B|G|527ns55
1J1U|1|B|U|546||||4_5561J1U|1|B|A|509||||4_556s33
1J1U|1|B|U|546||||4_5561J1U|1|B|A|545||||4_556s53
1J1U|1|B|U|546||||4_5561J1U|1|B|C|526||||4_556ncWW
1J1U|1|B|U|546||||4_5561J1U|1|B|G|510||||4_556ncWH
1J1U|1|B|U|546||||4_5561J1U|1|B|G|527||||4_556ns55
1J1U|1|B|U|5521J1U|1|B|C|551s53
1J1U|1|B|U|5521J1U|1|B|G|553s35
1J1U|1|B|U|5521J1U|1|B|G|564cWW
1J1U|1|B|U|5521J1U|1|B|G|565s55
1J1U|1|B|U|5521J1U|1|B|U|5520BPh
1J1U|1|B|U|552||||4_5561J1U|1|B|C|551||||4_556s53
1J1U|1|B|U|552||||4_5561J1U|1|B|G|553||||4_556s35
1J1U|1|B|U|552||||4_5561J1U|1|B|G|564||||4_556cWW
1J1U|1|B|U|552||||4_5561J1U|1|B|G|565||||4_556s55
1J1U|1|B|U|552||||4_5561J1U|1|B|U|552||||4_5560BPh
1J1U|1|B|U|5551J1U|1|B|A|559tWH
1J1U|1|B|U|5551J1U|1|B|G|554s53
1J1U|1|B|U|5551J1U|1|B|U|5550BPh
1J1U|1|B|U|5551J1U|1|B|U|556s35
1J1U|1|B|U|555||||4_5561J1U|1|B|A|559||||4_556tWH
1J1U|1|B|U|555||||4_5561J1U|1|B|G|554||||4_556s53
1J1U|1|B|U|555||||4_5561J1U|1|B|U|555||||4_5560BPh
1J1U|1|B|U|555||||4_5561J1U|1|B|U|556||||4_556s35
1J1U|1|B|U|5561J1U|1|B|A|5595BPh
1J1U|1|B|U|5561J1U|1|B|G|519tSW
1J1U|1|B|U|5561J1U|1|B|U|555s53
1J1U|1|B|U|5561J1U|1|B|U|5560BPh
1J1U|1|B|U|556||||4_5561J1U|1|B|A|559||||4_5565BPh
1J1U|1|B|U|556||||4_5561J1U|1|B|G|519||||4_556tSW
1J1U|1|B|U|556||||4_5561J1U|1|B|U|555||||4_556s53
1J1U|1|B|U|556||||4_5561J1U|1|B|U|556||||4_5560BPh
1J1U|1|B|U|5611J1U|1|B|A|559
1J1U|1|B|U|5611J1U|1|B|A|560s539BPh
1J1U|1|B|U|5611J1U|1|B|G|5205BPh
1J1U|1|B|U|5611J1U|1|B|U|5610BPh
1J1U|1|B|U|561||||4_5561J1U|1|B|A|559||||4_556
1J1U|1|B|U|561||||4_5561J1U|1|B|A|560||||4_556s539BPh
1J1U|1|B|U|561||||4_5561J1U|1|B|G|520||||4_5565BPh
1J1U|1|B|U|561||||4_5561J1U|1|B|U|561||||4_5560BPh


Base-PairsCount (62)Relative Frequency
cWW460.742
tWW20.032
tWH60.097
cWS20.032
tWS20.032
tHH20.032
tSS20.032
Base-PhosphateCount (126)Relative Frequency
5BPh40.032
6BPh20.016
8BPh20.016
9BPh60.048
0BPh1120.889
Base-StackingCount (84)Relative Frequency
s33100.119
s53340.405
s55400.476

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)