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As of 12-Aug-2022 number of released structures: 12231
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NDB ID: UR0025  PDB ID: 1MHK 

RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1MHK|1|L|A|31MHK|1|L|A|3n0BP
1MHK|1|L|A|31MHK|1|L|G|2s53
1MHK|1|L|A|31MHK|1|L|U|4s35
1MHK|1|L|A|81MHK|1|L|A|80BPh
1MHK|1|L|A|81MHK|1|L|G|9s35
1MHK|1|L|A|81MHK|1|L|U|7s53
1MHK|1|L|A|81MHK|1|S|A|8s55
1MHK|1|L|A|81MHK|1|S|A|9ns35
1MHK|1|L|A|81MHK|1|S|G|7tHS
1MHK|1|L|C|11MHK|1|L|C|10BPh
1MHK|1|L|C|11MHK|1|L|G|2s35
1MHK|1|L|C|51MHK|1|L|C|50BPh
1MHK|1|L|C|51MHK|1|L|C|6s35
1MHK|1|L|C|51MHK|1|L|U|4s53
1MHK|1|L|C|61MHK|1|L|C|5s53
1MHK|1|L|C|61MHK|1|L|C|60BPh
1MHK|1|L|C|61MHK|1|L|U|7ns35
1MHK|1|L|C|61MHK|1|S|A|86BPh
1MHK|1|L|C|61MHK|1|S|G|7s33
1MHK|1|L|G|111MHK|1|L|G|110BPh
1MHK|1|L|G|111MHK|1|L|U|12s35
1MHK|1|L|G|111MHK|1|S|G|5s55
1MHK|1|L|G|111MHK|1|S|U|4cWW
1MHK|1|L|G|131MHK|1|L|G|130BPh
1MHK|1|L|G|131MHK|1|L|G|14s35
1MHK|1|L|G|131MHK|1|L|U|12s53
1MHK|1|L|G|131MHK|1|S|A|3s55
1MHK|1|L|G|131MHK|1|S|C|2cWW
1MHK|1|L|G|141MHK|1|L|G|13s53
1MHK|1|L|G|141MHK|1|L|G|140BPh
1MHK|1|L|G|141MHK|1|S|C|1cWW
1MHK|1|L|G|141MHK|1|S|C|2s55
1MHK|1|L|G|21MHK|1|L|A|3s35
1MHK|1|L|G|21MHK|1|L|C|1s53
1MHK|1|L|G|21MHK|1|L|G|2n0BP
1MHK|1|L|G|91MHK|1|L|A|8s53
1MHK|1|L|G|91MHK|1|L|G|90BPh
1MHK|1|L|G|91MHK|1|L|U|10s35
1MHK|1|L|G|91MHK|1|S|A|9tSS
1MHK|1|L|G|91MHK|1|S|C|6cWW
1MHK|1|L|G|91MHK|1|S|G|7s55
1MHK|1|L|U|101MHK|1|L|G|9s53
1MHK|1|L|U|101MHK|1|L|U|100BPh
1MHK|1|L|U|101MHK|1|S|G|5cWW
1MHK|1|L|U|121MHK|1|L|G|11s53
1MHK|1|L|U|121MHK|1|L|G|13s35
1MHK|1|L|U|121MHK|1|L|U|120BPh
1MHK|1|L|U|121MHK|1|S|A|3cWW
1MHK|1|L|U|41MHK|1|L|A|3s53
1MHK|1|L|U|41MHK|1|L|C|5s35
1MHK|1|L|U|41MHK|1|L|U|40BPh
1MHK|1|L|U|71MHK|1|L|A|8s35
1MHK|1|L|U|71MHK|1|L|C|6ns53
1MHK|1|L|U|71MHK|1|L|U|70BPh
1MHK|1|L|U|71MHK|1|S|A|8tWH
1MHK|1|L|U|71MHK|1|S|G|7s33
1MHK|1|S|A|31MHK|1|L|G|13s55
1MHK|1|S|A|31MHK|1|L|U|12cWW
1MHK|1|S|A|31MHK|1|S|A|30BPh
1MHK|1|S|A|31MHK|1|S|C|2s53
1MHK|1|S|A|31MHK|1|S|U|4s35
1MHK|1|S|A|81MHK|1|L|A|8s55
1MHK|1|S|A|81MHK|1|L|U|7tHW
1MHK|1|S|A|81MHK|1|S|A|8n0BP
1MHK|1|S|A|81MHK|1|S|A|9
1MHK|1|S|A|81MHK|1|S|G|7
1MHK|1|S|A|91MHK|1|L|A|8ns53
1MHK|1|S|A|91MHK|1|L|G|9tSS
1MHK|1|S|A|91MHK|1|L|U|10
1MHK|1|S|A|91MHK|1|S|A|8
1MHK|1|S|A|91MHK|1|S|A|9n0BP
1MHK|1|S|A|91MHK|1|S|C|10s35
1MHK|1|S|C|11MHK|1|L|G|14cWW
1MHK|1|S|C|11MHK|1|S|C|10BPh
1MHK|1|S|C|11MHK|1|S|C|2s35
1MHK|1|S|C|101MHK|1|S|A|9s53
1MHK|1|S|C|101MHK|1|S|C|100BPh
1MHK|1|S|C|101MHK|1|S|C|11s35
1MHK|1|S|C|111MHK|1|S|C|10s53
1MHK|1|S|C|111MHK|1|S|C|110BPh
1MHK|1|S|C|111MHK|1|S|G|12s35
1MHK|1|S|C|21MHK|1|L|G|13cWW
1MHK|1|S|C|21MHK|1|L|G|14s55
1MHK|1|S|C|21MHK|1|S|A|3s35
1MHK|1|S|C|21MHK|1|S|C|1s53
1MHK|1|S|C|21MHK|1|S|C|20BPh
1MHK|1|S|C|61MHK|1|L|G|9cWW
1MHK|1|S|C|61MHK|1|S|C|60BPh
1MHK|1|S|C|61MHK|1|S|G|5s53
1MHK|1|S|C|61MHK|1|S|G|7s35
1MHK|1|S|G|121MHK|1|S|C|11s53
1MHK|1|S|G|121MHK|1|S|G|120BPh
1MHK|1|S|G|51MHK|1|L|G|11s55
1MHK|1|S|G|51MHK|1|L|U|10cWW
1MHK|1|S|G|51MHK|1|S|C|6s35
1MHK|1|S|G|51MHK|1|S|G|5n0BP
1MHK|1|S|G|51MHK|1|S|U|4ns53
1MHK|1|S|G|71MHK|1|L|A|8tSH
1MHK|1|S|G|71MHK|1|L|C|6s33
1MHK|1|S|G|71MHK|1|L|G|9s55
1MHK|1|S|G|71MHK|1|L|U|7s335BPh
1MHK|1|S|G|71MHK|1|S|C|6s53
1MHK|1|S|G|71MHK|1|S|G|70BPh
1MHK|1|S|U|41MHK|1|L|G|11cWW
1MHK|1|S|U|41MHK|1|S|A|3s53
1MHK|1|S|U|41MHK|1|S|G|5ns35
1MHK|1|S|U|41MHK|1|S|U|40BPh


Base-PairsCount (9)Relative Frequency
cWW60.667
tWH10.111
tHS10.111
tSS10.111
Base-PhosphateCount (23)Relative Frequency
5BPh10.043
6BPh10.043
0BPh210.913
Base-StackingCount (13)Relative Frequency
s3320.154
s5360.462
s5550.385

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)

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