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NDB ID: 1MIS  PDB ID: 1MIS 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1MIS|1|A|A|51MIS|1|A|C|6s35
1MIS|1|A|A|51MIS|1|A|G|4s53
1MIS|1|A|A|51MIS|1|B|A|13s55
1MIS|1|A|A|51MIS|1|B|G|12cWW
1MIS|1|A|C|21MIS|1|A|C|20BPh
1MIS|1|A|C|21MIS|1|A|G|1s53
1MIS|1|A|C|21MIS|1|A|G|3s35
1MIS|1|A|C|21MIS|1|B|G|15cWW
1MIS|1|A|C|61MIS|1|A|A|5s53
1MIS|1|A|C|61MIS|1|A|C|60BPh
1MIS|1|A|C|61MIS|1|A|G|7s35
1MIS|1|A|C|61MIS|1|B|G|11cWW
1MIS|1|A|C|61MIS|1|B|G|12ns55
1MIS|1|A|C|81MIS|1|A|C|80BPh
1MIS|1|A|C|81MIS|1|A|G|7s53
1MIS|1|A|C|81MIS|1|B|G|9cWW
1MIS|1|A|G|11MIS|1|A|C|2s35
1MIS|1|A|G|11MIS|1|A|G|10BPh
1MIS|1|A|G|11MIS|1|B|C|16cWW
1MIS|1|A|G|31MIS|1|A|C|2s53
1MIS|1|A|G|31MIS|1|A|G|30BPh
1MIS|1|A|G|31MIS|1|A|G|4s35
1MIS|1|A|G|31MIS|1|B|C|14cWW
1MIS|1|A|G|31MIS|1|B|G|15s55
1MIS|1|A|G|41MIS|1|A|A|5s35
1MIS|1|A|G|41MIS|1|A|G|3s53
1MIS|1|A|G|41MIS|1|A|G|40BPh
1MIS|1|A|G|41MIS|1|B|A|13cWW
1MIS|1|A|G|41MIS|1|B|C|14ns55
1MIS|1|A|G|71MIS|1|A|C|6s53
1MIS|1|A|G|71MIS|1|A|C|8s35
1MIS|1|A|G|71MIS|1|A|G|70BPh
1MIS|1|A|G|71MIS|1|B|C|10cWW
1MIS|1|A|G|71MIS|1|B|G|11s55
1MIS|1|B|A|131MIS|1|A|A|5s55
1MIS|1|B|A|131MIS|1|A|G|4cWW
1MIS|1|B|A|131MIS|1|B|C|14s35
1MIS|1|B|A|131MIS|1|B|G|12s53
1MIS|1|B|C|101MIS|1|A|G|7cWW
1MIS|1|B|C|101MIS|1|B|C|100BPh
1MIS|1|B|C|101MIS|1|B|G|11s35
1MIS|1|B|C|101MIS|1|B|G|9s53
1MIS|1|B|C|141MIS|1|A|G|3cWW
1MIS|1|B|C|141MIS|1|A|G|4ns55
1MIS|1|B|C|141MIS|1|B|A|13s53
1MIS|1|B|C|141MIS|1|B|C|140BPh
1MIS|1|B|C|141MIS|1|B|G|15s35
1MIS|1|B|C|161MIS|1|A|G|1cWW
1MIS|1|B|C|161MIS|1|B|C|160BPh
1MIS|1|B|C|161MIS|1|B|G|15s53
1MIS|1|B|G|111MIS|1|A|C|6cWW
1MIS|1|B|G|111MIS|1|A|G|7s55
1MIS|1|B|G|111MIS|1|B|C|10s53
1MIS|1|B|G|111MIS|1|B|G|110BPh
1MIS|1|B|G|111MIS|1|B|G|12s35
1MIS|1|B|G|121MIS|1|A|A|5cWW
1MIS|1|B|G|121MIS|1|A|C|6ns55
1MIS|1|B|G|121MIS|1|B|A|13s35
1MIS|1|B|G|121MIS|1|B|G|11s53
1MIS|1|B|G|121MIS|1|B|G|120BPh
1MIS|1|B|G|151MIS|1|A|C|2cWW
1MIS|1|B|G|151MIS|1|A|G|3s55
1MIS|1|B|G|151MIS|1|B|C|14s53
1MIS|1|B|G|151MIS|1|B|C|16s35
1MIS|1|B|G|151MIS|1|B|G|150BPh
1MIS|1|B|G|91MIS|1|A|C|8cWW
1MIS|1|B|G|91MIS|1|B|C|10s35


Base-PairsCount (8)Relative Frequency
cWW81.000
Base-PhosphateCount (13)Relative Frequency
0BPh131.000
Base-StackingCount (9)Relative Frequency
s5360.667
s5530.333

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)