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NDB ID: 1MNB  PDB ID: 1MNB 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1MNB|1|B|A|101MNB|1|B|A|100BPh
1MNB|1|B|A|101MNB|1|B|G|11s35
1MNB|1|B|A|101MNB|1|B|G|8s53
1MNB|1|B|A|101MNB|1|B|U|21cWW
1MNB|1|B|A|101MNB|1|B|U|7cHW
1MNB|1|B|A|151MNB|1|B|U|16ns35
1MNB|1|B|A|181MNB|1|B|A|180BPh
1MNB|1|B|A|181MNB|1|B|C|14ns55
1MNB|1|B|A|181MNB|1|B|G|19s35
1MNB|1|B|A|181MNB|1|B|U|13cWW
1MNB|1|B|A|251MNB|1|B|A|250BPh
1MNB|1|B|A|251MNB|1|B|G|24s53
1MNB|1|B|A|251MNB|1|B|G|26s35
1MNB|1|B|A|251MNB|1|B|U|4cWW
1MNB|1|B|C|121MNB|1|B|C|120BPh
1MNB|1|B|C|121MNB|1|B|G|11s53
1MNB|1|B|C|121MNB|1|B|G|19cWW
1MNB|1|B|C|121MNB|1|B|U|13s35
1MNB|1|B|C|141MNB|1|B|A|18ns55
1MNB|1|B|C|141MNB|1|B|U|13s53
1MNB|1|B|C|141MNB|1|B|U|176BPh
1MNB|1|B|C|201MNB|1|B|G|11cWW
1MNB|1|B|C|201MNB|1|B|G|19s53
1MNB|1|B|C|221MNB|1|B|C|220BPh
1MNB|1|B|C|221MNB|1|B|C|23s35
1MNB|1|B|C|221MNB|1|B|G|8cWW
1MNB|1|B|C|221MNB|1|B|U|21s53
1MNB|1|B|C|231MNB|1|B|C|22s53
1MNB|1|B|C|231MNB|1|B|C|230BPh
1MNB|1|B|C|231MNB|1|B|G|24s35
1MNB|1|B|C|231MNB|1|B|G|6cWW
1MNB|1|B|C|271MNB|1|B|C|270BPh
1MNB|1|B|C|271MNB|1|B|C|28s35
1MNB|1|B|C|271MNB|1|B|G|2cWW
1MNB|1|B|C|271MNB|1|B|G|26s53
1MNB|1|B|C|281MNB|1|B|C|27s53
1MNB|1|B|C|281MNB|1|B|C|280BPh
1MNB|1|B|C|281MNB|1|B|G|1cWW
1MNB|1|B|C|281MNB|1|B|G|2ns55
1MNB|1|B|C|31MNB|1|B|C|30BPh
1MNB|1|B|C|31MNB|1|B|G|2s53
1MNB|1|B|C|31MNB|1|B|G|26cWW
1MNB|1|B|C|31MNB|1|B|U|4s35
1MNB|1|B|C|51MNB|1|B|C|50BPh
1MNB|1|B|C|51MNB|1|B|G|24cWW
1MNB|1|B|C|51MNB|1|B|G|6ns35
1MNB|1|B|C|51MNB|1|B|U|4s53
1MNB|1|B|G|11MNB|1|B|C|28cWW
1MNB|1|B|G|11MNB|1|B|G|2s35
1MNB|1|B|G|111MNB|1|B|A|10s53
1MNB|1|B|G|111MNB|1|B|C|12s35
1MNB|1|B|G|111MNB|1|B|C|20cWW
1MNB|1|B|G|111MNB|1|B|G|110BPh
1MNB|1|B|G|111MNB|1|B|U|21s55
1MNB|1|B|G|191MNB|1|B|A|18s53
1MNB|1|B|G|191MNB|1|B|C|12cWW
1MNB|1|B|G|191MNB|1|B|C|20s35
1MNB|1|B|G|191MNB|1|B|U|13s55
1MNB|1|B|G|21MNB|1|B|C|27cWW
1MNB|1|B|G|21MNB|1|B|C|28ns55
1MNB|1|B|G|21MNB|1|B|C|3s35
1MNB|1|B|G|21MNB|1|B|G|1s53
1MNB|1|B|G|21MNB|1|B|G|20BPh
1MNB|1|B|G|241MNB|1|B|A|25s35
1MNB|1|B|G|241MNB|1|B|C|23s53
1MNB|1|B|G|241MNB|1|B|C|5cWW
1MNB|1|B|G|241MNB|1|B|G|240BPh
1MNB|1|B|G|241MNB|1|B|G|6s55
1MNB|1|B|G|261MNB|1|B|A|25s53
1MNB|1|B|G|261MNB|1|B|C|27s35
1MNB|1|B|G|261MNB|1|B|C|3cWW
1MNB|1|B|G|261MNB|1|B|G|260BPh
1MNB|1|B|G|261MNB|1|B|U|4ns55
1MNB|1|B|G|61MNB|1|B|C|23cWW
1MNB|1|B|G|61MNB|1|B|C|5ns53
1MNB|1|B|G|61MNB|1|B|G|24s55
1MNB|1|B|G|61MNB|1|B|G|60BPh
1MNB|1|B|G|61MNB|1|B|G|8s35
1MNB|1|B|G|81MNB|1|B|A|10s35
1MNB|1|B|G|81MNB|1|B|C|22cWW
1MNB|1|B|G|81MNB|1|B|G|6s53
1MNB|1|B|G|81MNB|1|B|U|7s35
1MNB|1|B|U|131MNB|1|B|A|18cWW
1MNB|1|B|U|131MNB|1|B|C|12s53
1MNB|1|B|U|131MNB|1|B|C|14s35
1MNB|1|B|U|131MNB|1|B|G|19s55
1MNB|1|B|U|131MNB|1|B|U|13n0BP
1MNB|1|B|U|161MNB|1|B|A|15ns53
1MNB|1|B|U|161MNB|1|B|U|160BPh
1MNB|1|B|U|211MNB|1|B|A|10cWW
1MNB|1|B|U|211MNB|1|B|C|22s35
1MNB|1|B|U|211MNB|1|B|G|11s55
1MNB|1|B|U|41MNB|1|B|A|25cWW
1MNB|1|B|U|41MNB|1|B|C|3s53
1MNB|1|B|U|41MNB|1|B|C|5s35
1MNB|1|B|U|41MNB|1|B|G|26ns55
1MNB|1|B|U|41MNB|1|B|U|40BPh
1MNB|1|B|U|71MNB|1|B|A|10cWH
1MNB|1|B|U|71MNB|1|B|G|8s53
1MNB|1|B|U|71MNB|1|B|U|70BPh
1MNB|1|B|U|91MNB|1|B|U|90BPh


Base-PairsCount (12)Relative Frequency
cWW110.917
cWH10.083
Base-PhosphateCount (20)Relative Frequency
6BPh10.050
0BPh190.950
Base-StackingCount (12)Relative Frequency
s5390.750
s5530.250

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)