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NDB ID: PR0087  PDB ID: 1N35 

RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1N35|1|B|G|12721N35|1|B|G|1272n0BP
1N35|1|B|G|12721N35|1|B|G|1273s35
1N35|1|B|G|12721N35|1|C|C|1290cWW
1N35|1|B|G|12731N35|1|B|G|1272s53
1N35|1|B|G|12731N35|1|B|G|12730BPh
1N35|1|B|G|12731N35|1|B|G|1274s35
1N35|1|B|G|12731N35|1|C|C|1289cWW
1N35|1|B|G|12731N35|1|C|C|1290ns55
1N35|1|B|G|12741N35|1|B|G|1273s53
1N35|1|B|G|12741N35|1|B|G|12740BPh
1N35|1|B|G|12741N35|1|B|G|1275s35
1N35|1|B|G|12741N35|1|C|C|1288cWW
1N35|1|B|G|12741N35|1|C|C|1289s55
1N35|1|B|G|12751N35|1|B|G|1274s53
1N35|1|B|G|12751N35|1|B|G|12750BPh
1N35|1|B|G|12751N35|1|B|G|1276ns35
1N35|1|B|G|12751N35|1|C|C|1287cWW
1N35|1|B|G|12751N35|1|C|C|1288ns55
1N35|1|B|G|12761N35|1|B|G|1275ns53
1N35|1|B|G|12761N35|1|B|G|1276n0BP
1N35|1|B|G|12761N35|1|C|C|1286cWW
1N35|1|B|G|12761N35|1|C|C|1287s55
1N35|1|C|A|12841N35|1|C|A|12840BPh
1N35|1|C|A|12841N35|1|C|U|1283s53
1N35|1|C|C|12861N35|1|B|G|1276cWW
1N35|1|C|C|12861N35|1|C|C|12860BPh
1N35|1|C|C|12861N35|1|C|C|1287s35
1N35|1|C|C|12861N35|1|C|G|1285s53
1N35|1|C|C|12871N35|1|B|G|1275cWW
1N35|1|C|C|12871N35|1|B|G|1276s55
1N35|1|C|C|12871N35|1|C|C|1286s53
1N35|1|C|C|12871N35|1|C|C|12870BPh
1N35|1|C|C|12871N35|1|C|C|1288s35
1N35|1|C|C|12881N35|1|B|G|1274cWW
1N35|1|C|C|12881N35|1|B|G|1275ns55
1N35|1|C|C|12881N35|1|C|C|1287s53
1N35|1|C|C|12881N35|1|C|C|12880BPh
1N35|1|C|C|12881N35|1|C|C|1289cSH
1N35|1|C|C|12891N35|1|B|G|1273cWW
1N35|1|C|C|12891N35|1|B|G|1274s55
1N35|1|C|C|12891N35|1|C|C|1288cHS
1N35|1|C|C|12891N35|1|C|C|12890BPh
1N35|1|C|C|12901N35|1|B|G|1272cWW
1N35|1|C|C|12901N35|1|B|G|1273ns55
1N35|1|C|C|12901N35|1|C|C|12900BPh
1N35|1|C|G|12851N35|1|C|C|1286s35
1N35|1|C|G|12851N35|1|C|G|12850BPh
1N35|1|C|U|12831N35|1|C|A|1284s35
1N35|1|C|U|12831N35|1|C|U|12830BPh


Base-PairsCount (6)Relative Frequency
cWW50.833
cHS10.167
Base-PhosphateCount (11)Relative Frequency
0BPh111.000
Base-StackingCount (4)Relative Frequency
s5320.500
s5520.500

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)

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