NDB ID: PR0087 PDB ID: 1N35 
RNA Base-Pairs, Stacking and other pairwise interactions
CSV FormatNucleotide 1 | Nucleotide 2 | Base-Pairs | Base-Stacking | Base-Phosphate |
---|
1N35|1|B|G|1272 | 1N35|1|B|G|1272 | | | n0BP |
1N35|1|B|G|1272 | 1N35|1|B|G|1273 | | s35 | |
1N35|1|B|G|1272 | 1N35|1|C|C|1290 | cWW | | |
1N35|1|B|G|1273 | 1N35|1|B|G|1272 | | s53 | |
1N35|1|B|G|1273 | 1N35|1|B|G|1273 | | | 0BPh |
1N35|1|B|G|1273 | 1N35|1|B|G|1274 | | s35 | |
1N35|1|B|G|1273 | 1N35|1|C|C|1289 | cWW | | |
1N35|1|B|G|1273 | 1N35|1|C|C|1290 | | ns55 | |
1N35|1|B|G|1274 | 1N35|1|B|G|1273 | | s53 | |
1N35|1|B|G|1274 | 1N35|1|B|G|1274 | | | 0BPh |
1N35|1|B|G|1274 | 1N35|1|B|G|1275 | | s35 | |
1N35|1|B|G|1274 | 1N35|1|C|C|1288 | cWW | | |
1N35|1|B|G|1274 | 1N35|1|C|C|1289 | | s55 | |
1N35|1|B|G|1275 | 1N35|1|B|G|1274 | | s53 | |
1N35|1|B|G|1275 | 1N35|1|B|G|1275 | | | 0BPh |
1N35|1|B|G|1275 | 1N35|1|B|G|1276 | | ns35 | |
1N35|1|B|G|1275 | 1N35|1|C|C|1287 | cWW | | |
1N35|1|B|G|1275 | 1N35|1|C|C|1288 | | ns55 | |
1N35|1|B|G|1276 | 1N35|1|B|G|1275 | | ns53 | |
1N35|1|B|G|1276 | 1N35|1|B|G|1276 | | | n0BP |
1N35|1|B|G|1276 | 1N35|1|C|C|1286 | cWW | | |
1N35|1|B|G|1276 | 1N35|1|C|C|1287 | | s55 | |
1N35|1|C|A|1284 | 1N35|1|C|A|1284 | | | 0BPh |
1N35|1|C|A|1284 | 1N35|1|C|U|1283 | | s53 | |
1N35|1|C|C|1286 | 1N35|1|B|G|1276 | cWW | | |
1N35|1|C|C|1286 | 1N35|1|C|C|1286 | | | 0BPh |
1N35|1|C|C|1286 | 1N35|1|C|C|1287 | | s35 | |
1N35|1|C|C|1286 | 1N35|1|C|G|1285 | | s53 | |
1N35|1|C|C|1287 | 1N35|1|B|G|1275 | cWW | | |
1N35|1|C|C|1287 | 1N35|1|B|G|1276 | | s55 | |
1N35|1|C|C|1287 | 1N35|1|C|C|1286 | | s53 | |
1N35|1|C|C|1287 | 1N35|1|C|C|1287 | | | 0BPh |
1N35|1|C|C|1287 | 1N35|1|C|C|1288 | | s35 | |
1N35|1|C|C|1288 | 1N35|1|B|G|1274 | cWW | | |
1N35|1|C|C|1288 | 1N35|1|B|G|1275 | | ns55 | |
1N35|1|C|C|1288 | 1N35|1|C|C|1287 | | s53 | |
1N35|1|C|C|1288 | 1N35|1|C|C|1288 | | | 0BPh |
1N35|1|C|C|1288 | 1N35|1|C|C|1289 | cSH | | |
1N35|1|C|C|1289 | 1N35|1|B|G|1273 | cWW | | |
1N35|1|C|C|1289 | 1N35|1|B|G|1274 | | s55 | |
1N35|1|C|C|1289 | 1N35|1|C|C|1288 | cHS | | |
1N35|1|C|C|1289 | 1N35|1|C|C|1289 | | | 0BPh |
1N35|1|C|C|1290 | 1N35|1|B|G|1272 | cWW | | |
1N35|1|C|C|1290 | 1N35|1|B|G|1273 | | ns55 | |
1N35|1|C|C|1290 | 1N35|1|C|C|1290 | | | 0BPh |
1N35|1|C|G|1285 | 1N35|1|C|C|1286 | | s35 | |
1N35|1|C|G|1285 | 1N35|1|C|G|1285 | | | 0BPh |
1N35|1|C|U|1283 | 1N35|1|C|A|1284 | | s35 | |
1N35|1|C|U|1283 | 1N35|1|C|U|1283 | | | 0BPh |
Base-Pairs | Count (6) | Relative Frequency |
---|
cWW | 5 | 0.833 |
cHS | 1 | 0.167 |
Base-Phosphate | Count (11) | Relative Frequency |
---|
0BPh | 11 | 1.000 |
Base-Stacking | Count (4) | Relative Frequency |
---|
s53 | 2 | 0.500 |
s55 | 2 | 0.500 |