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NDB ID: 1NBR  PDB ID: 1NBR 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1NBR|1|A|A|111NBR|1|A|A|12s35
1NBR|1|A|A|111NBR|1|A|C|10s53
1NBR|1|A|A|111NBR|1|A|G|21s55
1NBR|1|A|A|111NBR|1|A|U|20ncWW
1NBR|1|A|A|121NBR|1|A|A|11s53
1NBR|1|A|A|121NBR|1|A|A|120BPh
1NBR|1|A|A|121NBR|1|A|C|13s35
1NBR|1|A|A|121NBR|1|A|U|19cWW
1NBR|1|A|A|121NBR|1|A|U|20ns55
1NBR|1|A|A|141NBR|1|A|A|14n0BP
1NBR|1|A|A|141NBR|1|A|C|13ns53
1NBR|1|A|A|141NBR|1|A|G|17s55
1NBR|1|A|A|141NBR|1|A|U|162BPh
1NBR|1|A|A|231NBR|1|A|A|23n0BP
1NBR|1|A|A|231NBR|1|A|C|24s35
1NBR|1|A|A|231NBR|1|A|G|22s53
1NBR|1|A|A|231NBR|1|A|G|6ns33
1NBR|1|A|A|231NBR|1|A|U|8cWW
1NBR|1|A|A|231NBR|1|A|U|9ns55
1NBR|1|A|A|31NBR|1|A|A|30BPh
1NBR|1|A|A|31NBR|1|A|C|28s55
1NBR|1|A|A|31NBR|1|A|G|2s53
1NBR|1|A|A|31NBR|1|A|G|4s35
1NBR|1|A|A|31NBR|1|A|U|27cWW
1NBR|1|A|C|101NBR|1|A|A|11s35
1NBR|1|A|C|101NBR|1|A|C|7ncHS
1NBR|1|A|C|101NBR|1|A|G|21cWW
1NBR|1|A|C|101NBR|1|A|G|22s55
1NBR|1|A|C|101NBR|1|A|U|9s53
1NBR|1|A|C|131NBR|1|A|A|12s53
1NBR|1|A|C|131NBR|1|A|A|14ns35
1NBR|1|A|C|131NBR|1|A|C|130BPh
1NBR|1|A|C|131NBR|1|A|G|17cWW
1NBR|1|A|C|181NBR|1|A|C|180BPh
1NBR|1|A|C|181NBR|1|A|G|17n0BP
1NBR|1|A|C|241NBR|1|A|A|23s53n9BP
1NBR|1|A|C|241NBR|1|A|C|240BPh
1NBR|1|A|C|241NBR|1|A|G|25ns35
1NBR|1|A|C|241NBR|1|A|G|6cWW
1NBR|1|A|C|261NBR|1|A|C|260BPh
1NBR|1|A|C|261NBR|1|A|G|25s53
1NBR|1|A|C|261NBR|1|A|G|4cWW
1NBR|1|A|C|261NBR|1|A|U|27s35
1NBR|1|A|C|281NBR|1|A|A|3s55
1NBR|1|A|C|281NBR|1|A|C|280BPh
1NBR|1|A|C|281NBR|1|A|C|29s35
1NBR|1|A|C|281NBR|1|A|G|2cWW
1NBR|1|A|C|281NBR|1|A|U|27s53
1NBR|1|A|C|291NBR|1|A|C|28s53
1NBR|1|A|C|291NBR|1|A|G|1cWW
1NBR|1|A|C|291NBR|1|A|G|2s55
1NBR|1|A|C|71NBR|1|A|C|10ncSH
1NBR|1|A|C|71NBR|1|A|C|70BPh
1NBR|1|A|G|11NBR|1|A|C|29cWW
1NBR|1|A|G|11NBR|1|A|G|2s35
1NBR|1|A|G|151NBR|1|A|A|141BPh
1NBR|1|A|G|151NBR|1|A|G|15
1NBR|1|A|G|151NBR|1|A|U|16
1NBR|1|A|G|171NBR|1|A|A|14s55
1NBR|1|A|G|171NBR|1|A|C|13cWW
1NBR|1|A|G|171NBR|1|A|G|170BPh
1NBR|1|A|G|171NBR|1|A|U|16
1NBR|1|A|G|171NBR|1|A|U|19s35
1NBR|1|A|G|21NBR|1|A|A|3s35
1NBR|1|A|G|21NBR|1|A|C|28cWW
1NBR|1|A|G|21NBR|1|A|C|29s55
1NBR|1|A|G|21NBR|1|A|G|1s53
1NBR|1|A|G|21NBR|1|A|G|20BPh
1NBR|1|A|G|211NBR|1|A|A|11s55
1NBR|1|A|G|211NBR|1|A|C|10cWW
1NBR|1|A|G|211NBR|1|A|G|210BPh
1NBR|1|A|G|211NBR|1|A|G|22s35
1NBR|1|A|G|211NBR|1|A|U|20ns53
1NBR|1|A|G|221NBR|1|A|A|23s35
1NBR|1|A|G|221NBR|1|A|C|10s55
1NBR|1|A|G|221NBR|1|A|G|21s53
1NBR|1|A|G|221NBR|1|A|U|9cWW
1NBR|1|A|G|251NBR|1|A|C|24ns53
1NBR|1|A|G|251NBR|1|A|C|26s35
1NBR|1|A|G|251NBR|1|A|G|25n0BP
1NBR|1|A|G|251NBR|1|A|G|6s55
1NBR|1|A|G|251NBR|1|A|U|5cWW
1NBR|1|A|G|41NBR|1|A|A|3s53
1NBR|1|A|G|41NBR|1|A|C|26cWW
1NBR|1|A|G|41NBR|1|A|G|4n0BP
1NBR|1|A|G|41NBR|1|A|U|27s55
1NBR|1|A|G|41NBR|1|A|U|5s35
1NBR|1|A|G|61NBR|1|A|A|23ns33
1NBR|1|A|G|61NBR|1|A|C|24cWW
1NBR|1|A|G|61NBR|1|A|G|25s55
1NBR|1|A|G|61NBR|1|A|U|5
1NBR|1|A|G|61NBR|1|A|U|8ns35
1NBR|1|A|U|161NBR|1|A|A|14
1NBR|1|A|U|161NBR|1|A|G|15
1NBR|1|A|U|161NBR|1|A|G|17
1NBR|1|A|U|191NBR|1|A|A|12cWW
1NBR|1|A|U|191NBR|1|A|G|17s53
1NBR|1|A|U|191NBR|1|A|U|19n0BP
1NBR|1|A|U|191NBR|1|A|U|20s35
1NBR|1|A|U|201NBR|1|A|A|11ncWW
1NBR|1|A|U|201NBR|1|A|A|12ns55
1NBR|1|A|U|201NBR|1|A|G|21ns35
1NBR|1|A|U|201NBR|1|A|U|19s53n9BP
1NBR|1|A|U|271NBR|1|A|A|3cWW
1NBR|1|A|U|271NBR|1|A|C|26s53
1NBR|1|A|U|271NBR|1|A|C|28s35
1NBR|1|A|U|271NBR|1|A|G|4s55
1NBR|1|A|U|271NBR|1|A|U|27n0BP
1NBR|1|A|U|51NBR|1|A|G|25cWW
1NBR|1|A|U|51NBR|1|A|G|4s53
1NBR|1|A|U|51NBR|1|A|G|6
1NBR|1|A|U|51NBR|1|A|U|50BPh
1NBR|1|A|U|81NBR|1|A|A|23cWW
1NBR|1|A|U|81NBR|1|A|C|7
1NBR|1|A|U|81NBR|1|A|G|6ns53
1NBR|1|A|U|81NBR|1|A|U|80BPh
1NBR|1|A|U|81NBR|1|A|U|9s35
1NBR|1|A|U|91NBR|1|A|A|23ns55
1NBR|1|A|U|91NBR|1|A|C|10s35
1NBR|1|A|U|91NBR|1|A|C|7
1NBR|1|A|U|91NBR|1|A|G|22cWW
1NBR|1|A|U|91NBR|1|A|U|8s539BPh
1NBR|1|A|U|91NBR|1|A|U|90BPh


Base-PairsCount (11)Relative Frequency
cWW111.000
Base-PhosphateCount (17)Relative Frequency
1BPh10.059
2BPh10.059
9BPh10.059
0BPh140.824
Base-StackingCount (13)Relative Frequency
s5360.462
s5570.538

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)