A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
Search for released structures

NDB ID: 1NYB  PDB ID: 1NYB 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1NYB|1|B|A|121NYB|1|B|A|120BPh
1NYB|1|B|A|121NYB|1|B|A|13s35
1NYB|1|B|A|131NYB|1|B|A|12s53
1NYB|1|B|A|131NYB|1|B|C|14s35
1NYB|1|B|A|131NYB|1|B|U|11ntHS
1NYB|1|B|A|211NYB|1|B|A|210BPh
1NYB|1|B|A|211NYB|1|B|G|20s53
1NYB|1|B|A|211NYB|1|B|G|22s35
1NYB|1|B|A|211NYB|1|B|U|4cWW
1NYB|1|B|A|61NYB|1|B|A|60BPh
1NYB|1|B|A|61NYB|1|B|C|5s53
1NYB|1|B|A|61NYB|1|B|C|7s35
1NYB|1|B|A|61NYB|1|B|G|20s55
1NYB|1|B|A|61NYB|1|B|U|19cWW
1NYB|1|B|C|101NYB|1|B|C|10n0BP
1NYB|1|B|C|101NYB|1|B|C|15
1NYB|1|B|C|101NYB|1|B|G|16s55
1NYB|1|B|C|101NYB|1|B|U|11s35
1NYB|1|B|C|101NYB|1|B|U|9s53
1NYB|1|B|C|141NYB|1|B|A|13s53
1NYB|1|B|C|141NYB|1|B|C|14n0BP
1NYB|1|B|C|141NYB|1|B|C|15s35
1NYB|1|B|C|141NYB|1|B|U|11ntHS
1NYB|1|B|C|151NYB|1|B|C|10
1NYB|1|B|C|151NYB|1|B|C|14s53n9BP
1NYB|1|B|C|151NYB|1|B|C|150BPh
1NYB|1|B|C|151NYB|1|B|G|16s35
1NYB|1|B|C|151NYB|1|B|U|11ns55
1NYB|1|B|C|231NYB|1|B|C|230BPh
1NYB|1|B|C|231NYB|1|B|C|24s35
1NYB|1|B|C|231NYB|1|B|G|2cWW
1NYB|1|B|C|231NYB|1|B|G|22s53
1NYB|1|B|C|241NYB|1|B|C|23s53
1NYB|1|B|C|241NYB|1|B|C|240BPh
1NYB|1|B|C|241NYB|1|B|G|1cWW
1NYB|1|B|C|241NYB|1|B|G|2s55
1NYB|1|B|C|51NYB|1|B|A|6s35
1NYB|1|B|C|51NYB|1|B|G|20cWW
1NYB|1|B|C|51NYB|1|B|U|4s53
1NYB|1|B|C|71NYB|1|B|A|6s53
1NYB|1|B|C|71NYB|1|B|C|70BPh
1NYB|1|B|C|71NYB|1|B|C|8s35
1NYB|1|B|C|71NYB|1|B|G|18cWW
1NYB|1|B|C|81NYB|1|B|C|7s53
1NYB|1|B|C|81NYB|1|B|C|80BPh
1NYB|1|B|C|81NYB|1|B|G|17cWW
1NYB|1|B|C|81NYB|1|B|G|18s55
1NYB|1|B|C|81NYB|1|B|U|9s35
1NYB|1|B|G|11NYB|1|B|C|24cWW
1NYB|1|B|G|11NYB|1|B|G|2s35
1NYB|1|B|G|161NYB|1|B|C|10s55
1NYB|1|B|G|161NYB|1|B|C|15s53
1NYB|1|B|G|161NYB|1|B|G|17s35
1NYB|1|B|G|161NYB|1|B|U|9cWW
1NYB|1|B|G|171NYB|1|B|C|8cWW
1NYB|1|B|G|171NYB|1|B|G|16s53
1NYB|1|B|G|171NYB|1|B|G|170BPh
1NYB|1|B|G|171NYB|1|B|G|18s35
1NYB|1|B|G|171NYB|1|B|U|9s55
1NYB|1|B|G|181NYB|1|B|C|7cWW
1NYB|1|B|G|181NYB|1|B|C|8s55
1NYB|1|B|G|181NYB|1|B|G|17s53
1NYB|1|B|G|181NYB|1|B|U|19s35
1NYB|1|B|G|21NYB|1|B|C|23cWW
1NYB|1|B|G|21NYB|1|B|C|24s55
1NYB|1|B|G|21NYB|1|B|G|1s53
1NYB|1|B|G|21NYB|1|B|G|20BPh
1NYB|1|B|G|21NYB|1|B|U|3s35
1NYB|1|B|G|201NYB|1|B|A|21s35
1NYB|1|B|G|201NYB|1|B|A|6s55
1NYB|1|B|G|201NYB|1|B|C|5cWW
1NYB|1|B|G|201NYB|1|B|G|200BPh
1NYB|1|B|G|201NYB|1|B|U|19s53
1NYB|1|B|G|221NYB|1|B|A|21s53
1NYB|1|B|G|221NYB|1|B|C|23s35
1NYB|1|B|G|221NYB|1|B|G|22n0BP
1NYB|1|B|G|221NYB|1|B|U|3cWW
1NYB|1|B|G|221NYB|1|B|U|4s55
1NYB|1|B|U|111NYB|1|B|A|13ntSH
1NYB|1|B|U|111NYB|1|B|C|10s53
1NYB|1|B|U|111NYB|1|B|C|14ntSH5BPh
1NYB|1|B|U|111NYB|1|B|C|15ns55
1NYB|1|B|U|111NYB|1|B|U|11n0BP
1NYB|1|B|U|191NYB|1|B|A|6cWW
1NYB|1|B|U|191NYB|1|B|G|18s53
1NYB|1|B|U|191NYB|1|B|G|20s35
1NYB|1|B|U|191NYB|1|B|U|190BPh
1NYB|1|B|U|31NYB|1|B|G|2s53
1NYB|1|B|U|31NYB|1|B|G|22cWW
1NYB|1|B|U|31NYB|1|B|U|30BPh
1NYB|1|B|U|31NYB|1|B|U|4s35
1NYB|1|B|U|41NYB|1|B|A|21cWW
1NYB|1|B|U|41NYB|1|B|C|5s35
1NYB|1|B|U|41NYB|1|B|G|22s55
1NYB|1|B|U|41NYB|1|B|U|3s53
1NYB|1|B|U|41NYB|1|B|U|40BPh
1NYB|1|B|U|91NYB|1|B|C|10s35
1NYB|1|B|U|91NYB|1|B|C|8s53
1NYB|1|B|U|91NYB|1|B|G|16cWW
1NYB|1|B|U|91NYB|1|B|G|17s55


Base-PairsCount (9)Relative Frequency
cWW91.000
Base-PhosphateCount (15)Relative Frequency
5BPh10.067
0BPh140.933
Base-StackingCount (12)Relative Frequency
s5360.500
s5560.500

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)