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As of 23-Nov-2022 number of released structures: 12471
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NDB ID: PR0096  PDB ID: 1O0C 

RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1O0C|1|B|A|9071O0C|1|B|A|907n0BP
1O0C|1|B|A|9071O0C|1|B|A|967s55
1O0C|1|B|A|9071O0C|1|B|C|949s35
1O0C|1|B|A|9071O0C|1|B|U|906s53
1O0C|1|B|A|9071O0C|1|B|U|966cWW
1O0C|1|B|A|9131O0C|1|B|A|9130BPh
1O0C|1|B|A|9131O0C|1|B|A|914s35
1O0C|1|B|A|9131O0C|1|B|A|922tSH
1O0C|1|B|A|9131O0C|1|B|A|945tWW
1O0C|1|B|A|9131O0C|1|B|C|909n7BP
1O0C|1|B|A|9131O0C|1|B|C|912s53
1O0C|1|B|A|9131O0C|1|B|G|923ns55
1O0C|1|B|A|9131O0C|1|B|U|908s33
1O0C|1|B|A|9141O0C|1|B|A|913s53
1O0C|1|B|A|9141O0C|1|B|A|921cWS
1O0C|1|B|A|9141O0C|1|B|A|922s55
1O0C|1|B|A|9141O0C|1|B|G|915s35
1O0C|1|B|A|9141O0C|1|B|U|908tHW
1O0C|1|B|A|9211O0C|1|B|A|914cSW
1O0C|1|B|A|9211O0C|1|B|A|945s33
1O0C|1|B|A|9211O0C|1|B|C|948s55
1O0C|1|B|A|9211O0C|1|B|U|908tSS
1O0C|1|B|A|9211O0C|1|B|U|947
1O0C|1|B|A|9221O0C|1|B|A|913tHS
1O0C|1|B|A|9221O0C|1|B|A|914s55
1O0C|1|B|A|9221O0C|1|B|G|923s35
1O0C|1|B|A|9261O0C|1|B|A|9260BPh
1O0C|1|B|A|9261O0C|1|B|C|925s53
1O0C|1|B|A|9261O0C|1|B|C|927s35
1O0C|1|B|A|9261O0C|1|B|C|944cWW
1O0C|1|B|A|9261O0C|1|B|G|910s55
1O0C|1|B|A|9311O0C|1|B|A|9310BPh
1O0C|1|B|A|9311O0C|1|B|C|940ns55
1O0C|1|B|A|9311O0C|1|B|G|930s53
1O0C|1|B|A|9311O0C|1|B|U|932s35
1O0C|1|B|A|9311O0C|1|B|U|939cWW
1O0C|1|B|A|9371O0C|1|B|A|9370BPh
1O0C|1|B|A|9371O0C|1|B|U|933ntHS
1O0C|1|B|A|9371O0C|1|B|U|935s53
1O0C|1|B|A|9371O0C|1|B|U|938s35
1O0C|1|B|A|9451O0C|1|B|A|913tWW
1O0C|1|B|A|9451O0C|1|B|A|921s33
1O0C|1|B|A|9451O0C|1|B|C|909s552BPh
1O0C|1|B|A|9511O0C|1|B|A|9510BPh
1O0C|1|B|A|9511O0C|1|B|G|950s53
1O0C|1|B|A|9511O0C|1|B|G|952s35
1O0C|1|B|A|9511O0C|1|B|U|963cWW
1O0C|1|B|A|9581O0C|1|B|A|958n0BP
1O0C|1|B|A|9581O0C|1|B|C|961s35
1O0C|1|B|A|9581O0C|1|B|G|918s55
1O0C|1|B|A|9581O0C|1|B|U|954tHW
1O0C|1|B|A|9581O0C|1|B|U|955ns55
1O0C|1|B|A|9591O0C|1|B|A|9590BPh
1O0C|1|B|A|9591O0C|1|B|C|9166BPh
1O0C|1|B|A|9591O0C|1|B|C|948ns53
1O0C|1|B|A|9591O0C|1|B|G|915s53
1O0C|1|B|A|9591O0C|1|B|U|960s35
1O0C|1|B|A|9671O0C|1|B|A|907s55
1O0C|1|B|A|9671O0C|1|B|A|9670BPh
1O0C|1|B|A|9671O0C|1|B|C|968s35
1O0C|1|B|A|9671O0C|1|B|U|906cWW
1O0C|1|B|A|9671O0C|1|B|U|966s53
1O0C|1|B|A|9721O0C|1|B|A|9720BPh
1O0C|1|B|A|9761O0C|1|B|A|9760BPh
1O0C|1|B|A|9761O0C|1|B|C|975s53
1O0C|1|B|C|9091O0C|1|B|A|945s55
1O0C|1|B|C|9091O0C|1|B|C|909n0BP
1O0C|1|B|C|9091O0C|1|B|G|923tHH
1O0C|1|B|C|9111O0C|1|B|C|9110BPh
1O0C|1|B|C|9111O0C|1|B|C|912s35
1O0C|1|B|C|9111O0C|1|B|G|910s53
1O0C|1|B|C|9111O0C|1|B|G|924cWW
1O0C|1|B|C|9121O0C|1|B|A|913s35
1O0C|1|B|C|9121O0C|1|B|C|911s53
1O0C|1|B|C|9121O0C|1|B|C|912n0BP
1O0C|1|B|C|9121O0C|1|B|G|923cWW
1O0C|1|B|C|9121O0C|1|B|G|924s55
1O0C|1|B|C|9161O0C|1|B|G|915n6BP
1O0C|1|B|C|9251O0C|1|B|A|926s35
1O0C|1|B|C|9251O0C|1|B|C|9250BPh
1O0C|1|B|C|9251O0C|1|B|G|910cWW
1O0C|1|B|C|9251O0C|1|B|G|924s53
1O0C|1|B|C|9271O0C|1|B|A|926s53
1O0C|1|B|C|9271O0C|1|B|C|9270BPh
1O0C|1|B|C|9271O0C|1|B|C|928s35
1O0C|1|B|C|9271O0C|1|B|G|943cWW
1O0C|1|B|C|9281O0C|1|B|C|927s53
1O0C|1|B|C|9281O0C|1|B|C|9280BPh
1O0C|1|B|C|9281O0C|1|B|G|929s35
1O0C|1|B|C|9281O0C|1|B|G|942cWW
1O0C|1|B|C|9281O0C|1|B|G|943s55
1O0C|1|B|C|9401O0C|1|B|A|931ns55
1O0C|1|B|C|9401O0C|1|B|C|9400BPh
1O0C|1|B|C|9401O0C|1|B|C|941s35
1O0C|1|B|C|9401O0C|1|B|G|930cWW
1O0C|1|B|C|9401O0C|1|B|U|939s53
1O0C|1|B|C|9411O0C|1|B|C|940s53
1O0C|1|B|C|9411O0C|1|B|C|9410BPh
1O0C|1|B|C|9411O0C|1|B|G|929cWW
1O0C|1|B|C|9411O0C|1|B|G|930s55
1O0C|1|B|C|9411O0C|1|B|G|942ns35
1O0C|1|B|C|9441O0C|1|B|A|926cWW
1O0C|1|B|C|9441O0C|1|B|C|9440BPh
1O0C|1|B|C|9441O0C|1|B|G|943s53
1O0C|1|B|C|9481O0C|1|B|A|921s55
1O0C|1|B|C|9481O0C|1|B|A|959ns35n9BP
1O0C|1|B|C|9481O0C|1|B|C|9480BPh
1O0C|1|B|C|9481O0C|1|B|G|915tWW
1O0C|1|B|C|9481O0C|1|B|U|947
1O0C|1|B|C|9491O0C|1|B|A|907s53
1O0C|1|B|C|9491O0C|1|B|C|9490BPh
1O0C|1|B|C|9491O0C|1|B|G|950s35
1O0C|1|B|C|9491O0C|1|B|G|965cWW
1O0C|1|B|C|9561O0C|1|B|C|9560BPh
1O0C|1|B|C|9561O0C|1|B|G|919cWW
1O0C|1|B|C|9561O0C|1|B|G|957s35
1O0C|1|B|C|9611O0C|1|B|A|958s53
1O0C|1|B|C|9611O0C|1|B|C|9610BPh
1O0C|1|B|C|9611O0C|1|B|C|962s35
1O0C|1|B|C|9611O0C|1|B|G|953cWW
1O0C|1|B|C|9611O0C|1|B|U|9607BPh
1O0C|1|B|C|9621O0C|1|B|C|961s53
1O0C|1|B|C|9621O0C|1|B|C|9620BPh
1O0C|1|B|C|9621O0C|1|B|G|952cWW
1O0C|1|B|C|9621O0C|1|B|G|953s55
1O0C|1|B|C|9621O0C|1|B|U|963s35
1O0C|1|B|C|9641O0C|1|B|C|9640BPh
1O0C|1|B|C|9641O0C|1|B|G|950cWW
1O0C|1|B|C|9641O0C|1|B|G|965s35
1O0C|1|B|C|9641O0C|1|B|U|963s53
1O0C|1|B|C|9681O0C|1|B|A|967s53
1O0C|1|B|C|9681O0C|1|B|C|9680BPh
1O0C|1|B|C|9681O0C|1|B|C|969s35
1O0C|1|B|C|9681O0C|1|B|G|905cWW
1O0C|1|B|C|9691O0C|1|B|C|968s53
1O0C|1|B|C|9691O0C|1|B|C|9690BPh
1O0C|1|B|C|9691O0C|1|B|C|970s35
1O0C|1|B|C|9691O0C|1|B|G|904cWW
1O0C|1|B|C|9691O0C|1|B|G|905s55
1O0C|1|B|C|9701O0C|1|B|C|969s53
1O0C|1|B|C|9701O0C|1|B|C|9700BPh
1O0C|1|B|C|9701O0C|1|B|C|971s35
1O0C|1|B|C|9701O0C|1|B|G|903cWW
1O0C|1|B|C|9701O0C|1|B|G|904s55
1O0C|1|B|C|9711O0C|1|B|C|970s53
1O0C|1|B|C|9711O0C|1|B|C|9710BPh
1O0C|1|B|C|9711O0C|1|B|G|902cWW
1O0C|1|B|C|9711O0C|1|B|G|903s55
1O0C|1|B|C|9741O0C|1|B|C|9740BPh
1O0C|1|B|C|9751O0C|1|B|A|976s35
1O0C|1|B|C|9751O0C|1|B|G|973s55
1O0C|1|B|G|9021O0C|1|B|C|971cWW
1O0C|1|B|G|9021O0C|1|B|G|902n0BP
1O0C|1|B|G|9021O0C|1|B|G|903s35
1O0C|1|B|G|9031O0C|1|B|C|970cWW
1O0C|1|B|G|9031O0C|1|B|C|971s55
1O0C|1|B|G|9031O0C|1|B|G|902s53
1O0C|1|B|G|9031O0C|1|B|G|9030BPh
1O0C|1|B|G|9031O0C|1|B|G|904s35
1O0C|1|B|G|9041O0C|1|B|C|969cWW
1O0C|1|B|G|9041O0C|1|B|C|970s55
1O0C|1|B|G|9041O0C|1|B|G|903s53
1O0C|1|B|G|9041O0C|1|B|G|9040BPh
1O0C|1|B|G|9041O0C|1|B|G|905s35
1O0C|1|B|G|9051O0C|1|B|C|968cWW
1O0C|1|B|G|9051O0C|1|B|C|969s55
1O0C|1|B|G|9051O0C|1|B|G|904s53
1O0C|1|B|G|9051O0C|1|B|U|906s35
1O0C|1|B|G|9101O0C|1|B|A|926s55
1O0C|1|B|G|9101O0C|1|B|C|911s35
1O0C|1|B|G|9101O0C|1|B|C|925cWW
1O0C|1|B|G|9101O0C|1|B|G|910n0BP
1O0C|1|B|G|9151O0C|1|B|A|914s53
1O0C|1|B|G|9151O0C|1|B|A|959s35
1O0C|1|B|G|9151O0C|1|B|C|948tWW
1O0C|1|B|G|9151O0C|1|B|G|9150BPh
1O0C|1|B|G|9151O0C|1|B|U|908s55
1O0C|1|B|G|9181O0C|1|B|A|958s55n1BP
1O0C|1|B|G|9181O0C|1|B|G|957s33
1O0C|1|B|G|9181O0C|1|B|U|955tWS
1O0C|1|B|G|9191O0C|1|B|C|956cWW
1O0C|1|B|G|9191O0C|1|B|G|919n0BP
1O0C|1|B|G|9191O0C|1|B|G|957s55
1O0C|1|B|G|9191O0C|1|B|U|920ncSH
1O0C|1|B|G|9231O0C|1|B|A|913ns55
1O0C|1|B|G|9231O0C|1|B|A|922s53
1O0C|1|B|G|9231O0C|1|B|C|909tHH
1O0C|1|B|G|9231O0C|1|B|C|912cWW
1O0C|1|B|G|9231O0C|1|B|G|9230BPh
1O0C|1|B|G|9231O0C|1|B|G|924s35
1O0C|1|B|G|9241O0C|1|B|C|911cWW
1O0C|1|B|G|9241O0C|1|B|C|912s55
1O0C|1|B|G|9241O0C|1|B|C|925s35
1O0C|1|B|G|9241O0C|1|B|G|923s53
1O0C|1|B|G|9241O0C|1|B|G|9240BPh
1O0C|1|B|G|9291O0C|1|B|C|928s53
1O0C|1|B|G|9291O0C|1|B|C|941cWW
1O0C|1|B|G|9291O0C|1|B|G|929n0BP
1O0C|1|B|G|9291O0C|1|B|G|930s35
1O0C|1|B|G|9291O0C|1|B|G|942s55
1O0C|1|B|G|9301O0C|1|B|A|931s35
1O0C|1|B|G|9301O0C|1|B|C|940cWW
1O0C|1|B|G|9301O0C|1|B|C|941s55
1O0C|1|B|G|9301O0C|1|B|G|929s53
1O0C|1|B|G|9301O0C|1|B|G|9300BPh
1O0C|1|B|G|9361O0C|1|B|G|9360BPh
1O0C|1|B|G|9421O0C|1|B|C|928cWW
1O0C|1|B|G|9421O0C|1|B|C|941ns53
1O0C|1|B|G|9421O0C|1|B|G|929s55
1O0C|1|B|G|9421O0C|1|B|G|9420BPh
1O0C|1|B|G|9421O0C|1|B|G|943s35
1O0C|1|B|G|9431O0C|1|B|C|927cWW
1O0C|1|B|G|9431O0C|1|B|C|928s55
1O0C|1|B|G|9431O0C|1|B|C|944s35
1O0C|1|B|G|9431O0C|1|B|G|942s53
1O0C|1|B|G|9431O0C|1|B|G|9430BPh
1O0C|1|B|G|9501O0C|1|B|A|951s35
1O0C|1|B|G|9501O0C|1|B|C|949s53
1O0C|1|B|G|9501O0C|1|B|C|964cWW
1O0C|1|B|G|9501O0C|1|B|G|9500BPh
1O0C|1|B|G|9501O0C|1|B|G|965s55
1O0C|1|B|G|9521O0C|1|B|A|951s53
1O0C|1|B|G|9521O0C|1|B|C|962cWW
1O0C|1|B|G|9521O0C|1|B|G|952n0BP
1O0C|1|B|G|9521O0C|1|B|G|953s35
1O0C|1|B|G|9521O0C|1|B|U|963s55
1O0C|1|B|G|9531O0C|1|B|C|961cWW
1O0C|1|B|G|9531O0C|1|B|C|962s55
1O0C|1|B|G|9531O0C|1|B|G|952s53
1O0C|1|B|G|9531O0C|1|B|G|9530BPh
1O0C|1|B|G|9531O0C|1|B|U|954s35
1O0C|1|B|G|9571O0C|1|B|C|956s53
1O0C|1|B|G|9571O0C|1|B|G|918s33
1O0C|1|B|G|9571O0C|1|B|G|919s55
1O0C|1|B|G|9571O0C|1|B|G|9570BPh
1O0C|1|B|G|9651O0C|1|B|C|949cWW
1O0C|1|B|G|9651O0C|1|B|C|964s53
1O0C|1|B|G|9651O0C|1|B|G|950s55
1O0C|1|B|G|9651O0C|1|B|G|9650BPh
1O0C|1|B|G|9651O0C|1|B|U|966s35
1O0C|1|B|G|9731O0C|1|B|A|9721BPh
1O0C|1|B|G|9731O0C|1|B|C|975s55n0BP
1O0C|1|B|U|9061O0C|1|B|A|907s35
1O0C|1|B|U|9061O0C|1|B|A|967cWW
1O0C|1|B|U|9061O0C|1|B|G|905s53
1O0C|1|B|U|9061O0C|1|B|U|9060BPh
1O0C|1|B|U|9081O0C|1|B|A|913s33
1O0C|1|B|U|9081O0C|1|B|A|914tWH
1O0C|1|B|U|9081O0C|1|B|A|921tSS
1O0C|1|B|U|9081O0C|1|B|G|915s55
1O0C|1|B|U|9081O0C|1|B|U|9080BPh
1O0C|1|B|U|9201O0C|1|B|G|919ncHS
1O0C|1|B|U|9201O0C|1|B|U|920n0BP
1O0C|1|B|U|9321O0C|1|B|A|931s53
1O0C|1|B|U|9321O0C|1|B|U|932n9BP
1O0C|1|B|U|9321O0C|1|B|U|933s35
1O0C|1|B|U|9321O0C|1|B|U|938ncWW
1O0C|1|B|U|9331O0C|1|B|A|937ntSH
1O0C|1|B|U|9331O0C|1|B|U|932s53
1O0C|1|B|U|9331O0C|1|B|U|9330BPh
1O0C|1|B|U|9351O0C|1|B|A|937s35
1O0C|1|B|U|9351O0C|1|B|U|9350BPh
1O0C|1|B|U|9381O0C|1|B|A|937s53
1O0C|1|B|U|9381O0C|1|B|U|932ncWW
1O0C|1|B|U|9381O0C|1|B|U|9380BPh
1O0C|1|B|U|9381O0C|1|B|U|939s35
1O0C|1|B|U|9391O0C|1|B|A|931cWW
1O0C|1|B|U|9391O0C|1|B|C|940s35
1O0C|1|B|U|9391O0C|1|B|U|938s53
1O0C|1|B|U|9391O0C|1|B|U|9390BPh
1O0C|1|B|U|9471O0C|1|B|A|921
1O0C|1|B|U|9471O0C|1|B|A|945
1O0C|1|B|U|9471O0C|1|B|C|948
1O0C|1|B|U|9471O0C|1|B|U|946n0BP
1O0C|1|B|U|9541O0C|1|B|A|958tWH
1O0C|1|B|U|9541O0C|1|B|G|953s53
1O0C|1|B|U|9541O0C|1|B|U|9540BPh
1O0C|1|B|U|9541O0C|1|B|U|955s35
1O0C|1|B|U|9551O0C|1|B|A|958ns555BPh
1O0C|1|B|U|9551O0C|1|B|G|918tSW
1O0C|1|B|U|9551O0C|1|B|U|954s53
1O0C|1|B|U|9551O0C|1|B|U|9550BPh
1O0C|1|B|U|9601O0C|1|B|A|958
1O0C|1|B|U|9601O0C|1|B|A|959s539BPh
1O0C|1|B|U|9601O0C|1|B|U|960n0BP
1O0C|1|B|U|9631O0C|1|B|A|951cWW
1O0C|1|B|U|9631O0C|1|B|C|962s53
1O0C|1|B|U|9631O0C|1|B|C|964s35
1O0C|1|B|U|9631O0C|1|B|G|952s55
1O0C|1|B|U|9631O0C|1|B|U|9630BPh
1O0C|1|B|U|9661O0C|1|B|A|907cWW
1O0C|1|B|U|9661O0C|1|B|A|967s35
1O0C|1|B|U|9661O0C|1|B|G|965s53
1O0C|1|B|U|9661O0C|1|B|U|9660BPh


Base-PairsCount (30)Relative Frequency
cWW210.700
tWW20.067
tWH20.067
cWS10.033
tWS10.033
tHH10.033
tHS10.033
tSS10.033
Base-PhosphateCount (56)Relative Frequency
1BPh10.018
2BPh10.018
5BPh10.018
6BPh10.018
7BPh10.018
9BPh10.018
0BPh500.893
Base-StackingCount (36)Relative Frequency
s3330.083
s53140.389
s55190.528

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)

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