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NDB ID: PR0199  PDB ID: 1OB2 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1OB2|1|B|A|141OB2|1|B|A|21ncWS
1OB2|1|B|A|141OB2|1|B|G|15s35
1OB2|1|B|A|141OB2|1|B|G|22s55
1OB2|1|B|A|141OB2|1|B|U|8tHW
1OB2|1|B|A|211OB2|1|B|A|14ncSW
1OB2|1|B|A|211OB2|1|B|A|210BPh
1OB2|1|B|A|211OB2|1|B|C|48s55
1OB2|1|B|A|211OB2|1|B|U|8tSS
1OB2|1|B|A|231OB2|1|B|A|230BPh
1OB2|1|B|A|231OB2|1|B|A|9tHH
1OB2|1|B|A|231OB2|1|B|C|13ns55
1OB2|1|B|A|231OB2|1|B|G|22s53
1OB2|1|B|A|231OB2|1|B|G|24s35
1OB2|1|B|A|231OB2|1|B|U|12cWW
1OB2|1|B|A|291OB2|1|B|A|29n0BP
1OB2|1|B|A|291OB2|1|B|C|28s53
1OB2|1|B|A|291OB2|1|B|G|30s35
1OB2|1|B|A|291OB2|1|B|G|42s55
1OB2|1|B|A|291OB2|1|B|U|41cWW
1OB2|1|B|A|311OB2|1|B|G|30s53
1OB2|1|B|A|351OB2|1|B|A|350BPh
1OB2|1|B|A|351OB2|1|B|A|36s35
1OB2|1|B|A|351OB2|1|B|U|33ns33
1OB2|1|B|A|361OB2|1|B|A|35s53
1OB2|1|B|A|361OB2|1|B|A|360BPh
1OB2|1|B|A|381OB2|1|B|A|380BPh
1OB2|1|B|A|441OB2|1|B|A|440BPh
1OB2|1|B|A|441OB2|1|B|C|27ncWW
1OB2|1|B|A|441OB2|1|B|G|43s53
1OB2|1|B|A|441OB2|1|B|G|45s35
1OB2|1|B|A|51OB2|1|B|A|50BPh
1OB2|1|B|A|51OB2|1|B|G|4s53
1OB2|1|B|A|51OB2|1|B|U|6s35
1OB2|1|B|A|51OB2|1|B|U|68cWW
1OB2|1|B|A|51OB2|1|B|U|69ns55
1OB2|1|B|A|621OB2|1|B|A|620BPh
1OB2|1|B|A|621OB2|1|B|C|61s53
1OB2|1|B|A|621OB2|1|B|C|63s35
1OB2|1|B|A|621OB2|1|B|G|53s55
1OB2|1|B|A|621OB2|1|B|U|52cWW
1OB2|1|B|A|641OB2|1|B|A|64n0BP
1OB2|1|B|A|641OB2|1|B|C|63s53
1OB2|1|B|A|641OB2|1|B|G|51s55
1OB2|1|B|A|641OB2|1|B|G|65s35
1OB2|1|B|A|641OB2|1|B|U|50cWW
1OB2|1|B|A|661OB2|1|B|A|660BPh
1OB2|1|B|A|661OB2|1|B|A|67s35
1OB2|1|B|A|661OB2|1|B|G|65s53
1OB2|1|B|A|661OB2|1|B|U|7cWW
1OB2|1|B|A|671OB2|1|B|A|66s53
1OB2|1|B|A|671OB2|1|B|A|670BPh
1OB2|1|B|A|671OB2|1|B|U|6cWW
1OB2|1|B|A|671OB2|1|B|U|68s35
1OB2|1|B|A|731OB2|1|B|C|72s53
1OB2|1|B|A|731OB2|1|B|C|74s35
1OB2|1|B|A|731OB2|1|B|G|1s55
1OB2|1|B|A|761OB2|1|B|A|76n0BP
1OB2|1|B|A|91OB2|1|B|A|23tHH6BPh
1OB2|1|B|A|91OB2|1|B|G|22s53
1OB2|1|B|A|91OB2|1|B|G|45s33
1OB2|1|B|C|111OB2|1|B|A|9
1OB2|1|B|C|111OB2|1|B|C|110BPh
1OB2|1|B|C|111OB2|1|B|G|24cWW
1OB2|1|B|C|111OB2|1|B|U|12s35
1OB2|1|B|C|131OB2|1|B|A|23ns55
1OB2|1|B|C|131OB2|1|B|A|97BPh
1OB2|1|B|C|131OB2|1|B|C|13n0BP
1OB2|1|B|C|131OB2|1|B|G|22cWW
1OB2|1|B|C|131OB2|1|B|U|12s53
1OB2|1|B|C|131OB2|1|B|U|8s33
1OB2|1|B|C|21OB2|1|B|C|20BPh
1OB2|1|B|C|21OB2|1|B|C|72ns55
1OB2|1|B|C|21OB2|1|B|G|1s53
1OB2|1|B|C|21OB2|1|B|G|3s35
1OB2|1|B|C|21OB2|1|B|G|71cWW
1OB2|1|B|C|251OB2|1|B|C|250BPh
1OB2|1|B|C|251OB2|1|B|G|24s53
1OB2|1|B|C|271OB2|1|B|A|44ncWW
1OB2|1|B|C|271OB2|1|B|C|27n0BP
1OB2|1|B|C|271OB2|1|B|C|28s35
1OB2|1|B|C|271OB2|1|B|G|43cWW
1OB2|1|B|C|281OB2|1|B|A|29s35
1OB2|1|B|C|281OB2|1|B|C|27s53
1OB2|1|B|C|281OB2|1|B|C|280BPh
1OB2|1|B|C|281OB2|1|B|G|42cWW
1OB2|1|B|C|281OB2|1|B|G|43s55
1OB2|1|B|C|481OB2|1|B|A|21s55
1OB2|1|B|C|481OB2|1|B|C|480BPh
1OB2|1|B|C|481OB2|1|B|G|15tWW
1OB2|1|B|C|481OB2|1|B|U|59s35
1OB2|1|B|C|561OB2|1|B|C|56n0BP
1OB2|1|B|C|561OB2|1|B|G|19cWW
1OB2|1|B|C|561OB2|1|B|G|57s35
1OB2|1|B|C|601OB2|1|B|C|600BPh
1OB2|1|B|C|601OB2|1|B|G|19n7BP
1OB2|1|B|C|601OB2|1|B|U|59s53
1OB2|1|B|C|611OB2|1|B|A|62s35
1OB2|1|B|C|611OB2|1|B|C|609BPh
1OB2|1|B|C|611OB2|1|B|C|61n0BP
1OB2|1|B|C|611OB2|1|B|G|53cWW
1OB2|1|B|C|631OB2|1|B|A|62s53
1OB2|1|B|C|631OB2|1|B|A|64s35
1OB2|1|B|C|631OB2|1|B|C|630BPh
1OB2|1|B|C|631OB2|1|B|G|51cWW
1OB2|1|B|C|701OB2|1|B|C|700BPh
1OB2|1|B|C|701OB2|1|B|G|3cWW
1OB2|1|B|C|701OB2|1|B|G|4s55
1OB2|1|B|C|701OB2|1|B|G|71s35
1OB2|1|B|C|701OB2|1|B|U|69s53
1OB2|1|B|C|721OB2|1|B|A|73s35
1OB2|1|B|C|721OB2|1|B|C|2ns55
1OB2|1|B|C|721OB2|1|B|G|1cWW
1OB2|1|B|C|721OB2|1|B|G|71s53
1OB2|1|B|C|741OB2|1|B|A|73s53
1OB2|1|B|C|741OB2|1|B|C|740BPh
1OB2|1|B|C|741OB2|1|B|C|75s35
1OB2|1|B|C|751OB2|1|B|C|74s53
1OB2|1|B|C|751OB2|1|B|C|750BPh
1OB2|1|B|G|11OB2|1|B|A|73s55
1OB2|1|B|G|11OB2|1|B|C|2s35
1OB2|1|B|G|11OB2|1|B|C|72cWW
1OB2|1|B|G|11OB2|1|B|G|10BPh
1OB2|1|B|G|151OB2|1|B|A|14s53
1OB2|1|B|G|151OB2|1|B|C|48tWW
1OB2|1|B|G|151OB2|1|B|G|150BPh
1OB2|1|B|G|151OB2|1|B|U|8ns55
1OB2|1|B|G|181OB2|1|B|G|18n0BP
1OB2|1|B|G|181OB2|1|B|G|57s33
1OB2|1|B|G|191OB2|1|B|C|56cWW
1OB2|1|B|G|191OB2|1|B|G|20ncSS
1OB2|1|B|G|191OB2|1|B|G|57s55
1OB2|1|B|G|201OB2|1|B|G|19ncSS
1OB2|1|B|G|221OB2|1|B|A|14s55
1OB2|1|B|G|221OB2|1|B|A|21
1OB2|1|B|G|221OB2|1|B|A|23s35
1OB2|1|B|G|221OB2|1|B|A|9s35
1OB2|1|B|G|221OB2|1|B|C|13cWW
1OB2|1|B|G|221OB2|1|B|G|22n0BP
1OB2|1|B|G|241OB2|1|B|A|23s53
1OB2|1|B|G|241OB2|1|B|C|11cWW
1OB2|1|B|G|241OB2|1|B|C|25s35
1OB2|1|B|G|241OB2|1|B|G|240BPh
1OB2|1|B|G|241OB2|1|B|G|45
1OB2|1|B|G|241OB2|1|B|U|12s55
1OB2|1|B|G|31OB2|1|B|C|2s53
1OB2|1|B|G|31OB2|1|B|C|70cWW
1OB2|1|B|G|31OB2|1|B|G|3n0BP
1OB2|1|B|G|31OB2|1|B|G|4s35
1OB2|1|B|G|31OB2|1|B|G|71s55
1OB2|1|B|G|301OB2|1|B|A|29s53
1OB2|1|B|G|301OB2|1|B|A|31s35
1OB2|1|B|G|301OB2|1|B|G|300BPh
1OB2|1|B|G|301OB2|1|B|U|41s55
1OB2|1|B|G|41OB2|1|B|A|5s35
1OB2|1|B|G|41OB2|1|B|C|70s55
1OB2|1|B|G|41OB2|1|B|G|3s53
1OB2|1|B|G|41OB2|1|B|G|4n0BP
1OB2|1|B|G|41OB2|1|B|U|69cWW
1OB2|1|B|G|421OB2|1|B|A|29s55
1OB2|1|B|G|421OB2|1|B|C|28cWW
1OB2|1|B|G|421OB2|1|B|G|420BPh
1OB2|1|B|G|421OB2|1|B|G|43s35
1OB2|1|B|G|421OB2|1|B|U|41s53
1OB2|1|B|G|431OB2|1|B|A|44s35
1OB2|1|B|G|431OB2|1|B|C|27cWW
1OB2|1|B|G|431OB2|1|B|C|28s55
1OB2|1|B|G|431OB2|1|B|G|42s53
1OB2|1|B|G|431OB2|1|B|G|430BPh
1OB2|1|B|G|451OB2|1|B|A|44s53
1OB2|1|B|G|451OB2|1|B|A|9s33
1OB2|1|B|G|451OB2|1|B|G|24
1OB2|1|B|G|451OB2|1|B|G|450BPh
1OB2|1|B|G|511OB2|1|B|A|64s55
1OB2|1|B|G|511OB2|1|B|C|63cWW
1OB2|1|B|G|511OB2|1|B|G|510BPh
1OB2|1|B|G|511OB2|1|B|U|50s53
1OB2|1|B|G|511OB2|1|B|U|52s35
1OB2|1|B|G|531OB2|1|B|A|62s55
1OB2|1|B|G|531OB2|1|B|C|61cWW
1OB2|1|B|G|531OB2|1|B|G|530BPh
1OB2|1|B|G|531OB2|1|B|U|52s53
1OB2|1|B|G|531OB2|1|B|U|54s35
1OB2|1|B|G|571OB2|1|B|C|56s53
1OB2|1|B|G|571OB2|1|B|G|18s33
1OB2|1|B|G|571OB2|1|B|G|19s55n3BP
1OB2|1|B|G|571OB2|1|B|G|570BPh
1OB2|1|B|G|651OB2|1|B|A|64s53
1OB2|1|B|G|651OB2|1|B|A|66s35
1OB2|1|B|G|651OB2|1|B|U|50s55
1OB2|1|B|G|711OB2|1|B|C|2cWW
1OB2|1|B|G|711OB2|1|B|C|70s53
1OB2|1|B|G|711OB2|1|B|C|72s35
1OB2|1|B|G|711OB2|1|B|G|3s55
1OB2|1|B|G|711OB2|1|B|G|71n0BP
1OB2|1|B|U|121OB2|1|B|A|23cWW
1OB2|1|B|U|121OB2|1|B|C|11s53
1OB2|1|B|U|121OB2|1|B|C|13s35
1OB2|1|B|U|121OB2|1|B|G|24s55
1OB2|1|B|U|121OB2|1|B|U|12n0BP
1OB2|1|B|U|331OB2|1|B|A|35ns33
1OB2|1|B|U|331OB2|1|B|A|365BPh
1OB2|1|B|U|331OB2|1|B|U|330BPh
1OB2|1|B|U|411OB2|1|B|A|29cWW
1OB2|1|B|U|411OB2|1|B|G|30s55
1OB2|1|B|U|411OB2|1|B|G|42s35
1OB2|1|B|U|411OB2|1|B|U|410BPh
1OB2|1|B|U|471OB2|1|B|G|51n5BP
1OB2|1|B|U|471OB2|1|B|U|470BPh
1OB2|1|B|U|501OB2|1|B|A|64cWW
1OB2|1|B|U|501OB2|1|B|G|51s35
1OB2|1|B|U|501OB2|1|B|G|65s55
1OB2|1|B|U|501OB2|1|B|U|500BPh
1OB2|1|B|U|521OB2|1|B|A|62cWW
1OB2|1|B|U|521OB2|1|B|G|51s53
1OB2|1|B|U|521OB2|1|B|G|53s35
1OB2|1|B|U|521OB2|1|B|U|520BPh
1OB2|1|B|U|541OB2|1|B|G|53s53
1OB2|1|B|U|541OB2|1|B|U|540BPh
1OB2|1|B|U|591OB2|1|B|C|48s53
1OB2|1|B|U|591OB2|1|B|C|60s35
1OB2|1|B|U|591OB2|1|B|U|590BPh
1OB2|1|B|U|61OB2|1|B|A|5s53
1OB2|1|B|U|61OB2|1|B|A|67cWW
1OB2|1|B|U|61OB2|1|B|U|60BPh
1OB2|1|B|U|61OB2|1|B|U|7s35
1OB2|1|B|U|681OB2|1|B|A|5cWW
1OB2|1|B|U|681OB2|1|B|A|67s53
1OB2|1|B|U|681OB2|1|B|U|68n0BP
1OB2|1|B|U|681OB2|1|B|U|69s35
1OB2|1|B|U|691OB2|1|B|A|5ns55
1OB2|1|B|U|691OB2|1|B|C|70s35
1OB2|1|B|U|691OB2|1|B|G|4cWW
1OB2|1|B|U|691OB2|1|B|U|68s53
1OB2|1|B|U|691OB2|1|B|U|69n0BP
1OB2|1|B|U|71OB2|1|B|A|66cWW
1OB2|1|B|U|71OB2|1|B|U|6s53
1OB2|1|B|U|71OB2|1|B|U|70BPh
1OB2|1|B|U|81OB2|1|B|A|14tWH
1OB2|1|B|U|81OB2|1|B|A|21tSS
1OB2|1|B|U|81OB2|1|B|C|13s33
1OB2|1|B|U|81OB2|1|B|G|15ns55
1OB2|1|B|U|81OB2|1|B|U|8n0BP


Base-PairsCount (22)Relative Frequency
cWW180.818
tWW10.045
tWH10.045
tHH10.045
tSS10.045
Base-PhosphateCount (43)Relative Frequency
5BPh10.023
6BPh10.023
7BPh10.023
9BPh10.023
0BPh390.907
Base-StackingCount (35)Relative Frequency
s3330.086
s53190.543
s55130.371

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)