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As of 18-Jul-2019 number of released structures: 10288
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NDB ID: URF042  PDB ID: 1OSU 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1OSU|1|A|C|31OSU|1|A|C|30BPh
1OSU|1|A|C|31OSU|1|A|G|4s35
1OSU|1|A|C|31OSU|1|A|U|1||||4_556s55
1OSU|1|A|C|31OSU|1|A|U|2s53
1OSU|1|A|C|3||||2_4551OSU|1|A|C|3||||2_4550BPh
1OSU|1|A|C|3||||2_4551OSU|1|A|G|4||||2_455s35
1OSU|1|A|C|3||||2_4551OSU|1|A|G|6||||4_556cWW
1OSU|1|A|C|3||||2_4551OSU|1|A|U|2||||2_455s53
1OSU|1|A|C|3||||4_5561OSU|1|A|C|3||||4_5560BPh
1OSU|1|A|C|3||||4_5561OSU|1|A|G|4||||4_556s35
1OSU|1|A|C|3||||4_5561OSU|1|A|G|6||||2_455cWW
1OSU|1|A|C|3||||4_5561OSU|1|A|U|1s55
1OSU|1|A|C|3||||4_5561OSU|1|A|U|2||||4_556s53
1OSU|1|A|C|51OSU|1|A|C|50BPh
1OSU|1|A|C|51OSU|1|A|G|4s53
1OSU|1|A|C|51OSU|1|A|G|6s35
1OSU|1|A|C|5||||2_4551OSU|1|A|C|5||||2_4550BPh
1OSU|1|A|C|5||||2_4551OSU|1|A|G|4||||2_455s53
1OSU|1|A|C|5||||2_4551OSU|1|A|G|4||||4_556cWW
1OSU|1|A|C|5||||2_4551OSU|1|A|G|6||||2_455s35
1OSU|1|A|C|5||||4_5561OSU|1|A|C|5||||4_5560BPh
1OSU|1|A|C|5||||4_5561OSU|1|A|G|4||||2_455cWW
1OSU|1|A|C|5||||4_5561OSU|1|A|G|4||||4_556s53
1OSU|1|A|C|5||||4_5561OSU|1|A|G|6||||4_556s35
1OSU|1|A|G|41OSU|1|A|C|3s53
1OSU|1|A|G|41OSU|1|A|C|5s35
1OSU|1|A|G|41OSU|1|A|G|40BPh
1OSU|1|A|G|4||||2_4551OSU|1|A|C|3||||2_455s53
1OSU|1|A|G|4||||2_4551OSU|1|A|C|5||||2_455s35
1OSU|1|A|G|4||||2_4551OSU|1|A|C|5||||4_556cWW
1OSU|1|A|G|4||||2_4551OSU|1|A|G|4||||2_4550BPh
1OSU|1|A|G|4||||2_4551OSU|1|A|G|6||||4_556s55
1OSU|1|A|G|4||||4_5561OSU|1|A|C|3||||4_556s53
1OSU|1|A|G|4||||4_5561OSU|1|A|C|5||||2_455cWW
1OSU|1|A|G|4||||4_5561OSU|1|A|C|5||||4_556s35
1OSU|1|A|G|4||||4_5561OSU|1|A|G|4||||4_5560BPh
1OSU|1|A|G|4||||4_5561OSU|1|A|G|6||||2_455s55
1OSU|1|A|G|61OSU|1|A|C|5s53
1OSU|1|A|G|61OSU|1|A|G|60BPh
1OSU|1|A|G|6||||2_4551OSU|1|A|C|3||||4_556cWW
1OSU|1|A|G|6||||2_4551OSU|1|A|C|5||||2_455s53
1OSU|1|A|G|6||||2_4551OSU|1|A|G|4||||4_556s55
1OSU|1|A|G|6||||2_4551OSU|1|A|G|6||||2_4550BPh
1OSU|1|A|G|6||||2_4551OSU|1|A|U|1s35
1OSU|1|A|G|6||||4_5561OSU|1|A|C|3||||2_455cWW
1OSU|1|A|G|6||||4_5561OSU|1|A|C|5||||4_556s53
1OSU|1|A|G|6||||4_5561OSU|1|A|G|4||||2_455s55
1OSU|1|A|G|6||||4_5561OSU|1|A|G|6||||4_5560BPh
1OSU|1|A|U|11OSU|1|A|C|3||||4_556s55
1OSU|1|A|U|11OSU|1|A|G|6||||2_455s53
1OSU|1|A|U|11OSU|1|A|U|10BPh
1OSU|1|A|U|11OSU|1|A|U|2s35
1OSU|1|A|U|11OSU|1|A|U|2||||4_556tHW
1OSU|1|A|U|1||||2_4551OSU|1|A|U|1||||2_4550BPh
1OSU|1|A|U|1||||2_4551OSU|1|A|U|2||||2_455s35
1OSU|1|A|U|1||||4_5561OSU|1|A|C|3s55
1OSU|1|A|U|1||||4_5561OSU|1|A|U|1||||4_5560BPh
1OSU|1|A|U|1||||4_5561OSU|1|A|U|2tHW
1OSU|1|A|U|1||||4_5561OSU|1|A|U|2||||4_556s35
1OSU|1|A|U|21OSU|1|A|C|3s35
1OSU|1|A|U|21OSU|1|A|U|1s53n9BP
1OSU|1|A|U|21OSU|1|A|U|1||||4_556tWH
1OSU|1|A|U|21OSU|1|A|U|20BPh
1OSU|1|A|U|2||||2_4551OSU|1|A|C|3||||2_455s35
1OSU|1|A|U|2||||2_4551OSU|1|A|U|1||||2_455s53n9BP
1OSU|1|A|U|2||||2_4551OSU|1|A|U|2||||2_4550BPh
1OSU|1|A|U|2||||4_5561OSU|1|A|C|3||||4_556s35
1OSU|1|A|U|2||||4_5561OSU|1|A|U|1tWH
1OSU|1|A|U|2||||4_5561OSU|1|A|U|1||||4_556s53n9BP
1OSU|1|A|U|2||||4_5561OSU|1|A|U|2||||4_5560BPh


Base-PairsCount (6)Relative Frequency
cWW40.667
tWH20.333
Base-PhosphateCount (18)Relative Frequency
0BPh181.000
Base-StackingCount (10)Relative Frequency
s5360.600
s5540.400

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)