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NDB ID: 1PBM  PDB ID: 1PBM 

RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1PBM|1|A|C|11PBM|1|A|C|10BPh
1PBM|1|A|C|11PBM|1|A|G|2s35
1PBM|1|A|C|11PBM|1|B|G|12cWW
1PBM|1|A|C|31PBM|1|A|C|30BPh
1PBM|1|A|C|31PBM|1|A|G|2s53
1PBM|1|A|C|31PBM|1|A|G|4s35
1PBM|1|A|C|31PBM|1|B|G|10cWW
1PBM|1|A|C|51PBM|1|A|C|50BPh
1PBM|1|A|C|51PBM|1|A|G|4s53
1PBM|1|A|C|51PBM|1|A|G|6s35
1PBM|1|A|C|51PBM|1|B|G|8cWW
1PBM|1|A|G|21PBM|1|A|C|1s53
1PBM|1|A|G|21PBM|1|A|C|3s35
1PBM|1|A|G|21PBM|1|A|G|20BPh
1PBM|1|A|G|21PBM|1|B|C|11cWW
1PBM|1|A|G|21PBM|1|B|G|12s55
1PBM|1|A|G|41PBM|1|A|C|3s53
1PBM|1|A|G|41PBM|1|A|C|5s35
1PBM|1|A|G|41PBM|1|A|G|40BPh
1PBM|1|A|G|41PBM|1|B|C|9cWW
1PBM|1|A|G|41PBM|1|B|G|10s55
1PBM|1|A|G|61PBM|1|A|C|5s53
1PBM|1|A|G|61PBM|1|A|G|60BPh
1PBM|1|A|G|61PBM|1|B|C|7cWW
1PBM|1|A|G|61PBM|1|B|G|8s55
1PBM|1|B|C|111PBM|1|A|G|2cWW
1PBM|1|B|C|111PBM|1|B|C|110BPh
1PBM|1|B|C|111PBM|1|B|G|10s53
1PBM|1|B|C|111PBM|1|B|G|12s35
1PBM|1|B|C|71PBM|1|A|G|6cWW
1PBM|1|B|C|71PBM|1|B|C|70BPh
1PBM|1|B|C|71PBM|1|B|G|8s35
1PBM|1|B|C|91PBM|1|A|G|4cWW
1PBM|1|B|C|91PBM|1|B|C|90BPh
1PBM|1|B|C|91PBM|1|B|G|10s35
1PBM|1|B|C|91PBM|1|B|G|8s53
1PBM|1|B|G|101PBM|1|A|C|3cWW
1PBM|1|B|G|101PBM|1|A|G|4s55
1PBM|1|B|G|101PBM|1|B|C|11s35
1PBM|1|B|G|101PBM|1|B|C|9s53
1PBM|1|B|G|101PBM|1|B|G|100BPh
1PBM|1|B|G|121PBM|1|A|C|1cWW
1PBM|1|B|G|121PBM|1|A|G|2s55
1PBM|1|B|G|121PBM|1|B|C|11s53
1PBM|1|B|G|121PBM|1|B|G|120BPh
1PBM|1|B|G|81PBM|1|A|C|5cWW
1PBM|1|B|G|81PBM|1|A|G|6s55
1PBM|1|B|G|81PBM|1|B|C|7s53
1PBM|1|B|G|81PBM|1|B|C|9s35
1PBM|1|B|G|81PBM|1|B|G|80BPh


Base-PairsCount (6)Relative Frequency
cWW61.000
Base-PhosphateCount (12)Relative Frequency
0BPh121.000
Base-StackingCount (7)Relative Frequency
s5340.571
s5530.429

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)

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