NDB ID: 1Q8N PDB ID: 1Q8N 
RNA Base-Pairs, Stacking and other pairwise interactions
CSV FormatNucleotide 1 | Nucleotide 2 | Base-Pairs | Base-Stacking | Base-Phosphate |
---|
1Q8N|1|A|A|16 | 1Q8N|1|A|A|16 | | | 0BPh |
1Q8N|1|A|A|16 | 1Q8N|1|A|G|15 | | | |
1Q8N|1|A|A|16 | 1Q8N|1|A|G|17 | | s35 | |
1Q8N|1|A|A|18 | 1Q8N|1|A|A|18 | | | n0BP |
1Q8N|1|A|A|18 | 1Q8N|1|A|G|15 | | s55 | |
1Q8N|1|A|A|18 | 1Q8N|1|A|G|17 | | s53 | |
1Q8N|1|A|A|18 | 1Q8N|1|A|G|19 | | s35 | |
1Q8N|1|A|A|22 | 1Q8N|1|A|A|22 | | | 0BPh |
1Q8N|1|A|A|22 | 1Q8N|1|A|C|21 | | s53 | |
1Q8N|1|A|A|22 | 1Q8N|1|A|G|12 | | s55 | |
1Q8N|1|A|A|22 | 1Q8N|1|A|G|23 | | s35 | |
1Q8N|1|A|A|22 | 1Q8N|1|A|U|11 | cWW | | |
1Q8N|1|A|A|26 | 1Q8N|1|A|A|26 | | | 0BPh |
1Q8N|1|A|A|26 | 1Q8N|1|A|A|27 | | s35 | |
1Q8N|1|A|A|26 | 1Q8N|1|A|G|12 | | | n2BP |
1Q8N|1|A|A|26 | 1Q8N|1|A|U|11 | cWS | | |
1Q8N|1|A|A|27 | 1Q8N|1|A|A|26 | | s53 | |
1Q8N|1|A|A|27 | 1Q8N|1|A|A|27 | | | n0BP |
1Q8N|1|A|A|27 | 1Q8N|1|A|C|10 | ncWS | | |
1Q8N|1|A|A|27 | 1Q8N|1|A|C|28 | | s35 | |
1Q8N|1|A|A|27 | 1Q8N|1|A|G|23 | tWS | | |
1Q8N|1|A|A|27 | 1Q8N|1|A|U|11 | | | |
1Q8N|1|A|A|27 | 1Q8N|1|A|U|25 | | | |
1Q8N|1|A|A|3 | 1Q8N|1|A|A|3 | | | 0BPh |
1Q8N|1|A|A|3 | 1Q8N|1|A|A|35 | | s33 | |
1Q8N|1|A|A|3 | 1Q8N|1|A|G|2 | | s53 | |
1Q8N|1|A|A|3 | 1Q8N|1|A|U|36 | cWW | | |
1Q8N|1|A|A|3 | 1Q8N|1|A|U|4 | | s35 | |
1Q8N|1|A|A|30 | 1Q8N|1|A|A|31 | | | |
1Q8N|1|A|A|30 | 1Q8N|1|A|G|8 | ntHS | | |
1Q8N|1|A|A|31 | 1Q8N|1|A|A|30 | | | |
1Q8N|1|A|A|31 | 1Q8N|1|A|G|29 | tWS | | |
1Q8N|1|A|A|31 | 1Q8N|1|A|G|33 | | s35 | n0BP |
1Q8N|1|A|A|31 | 1Q8N|1|A|U|32 | | | n0BP |
1Q8N|1|A|A|35 | 1Q8N|1|A|A|3 | | s33 | |
1Q8N|1|A|A|35 | 1Q8N|1|A|A|35 | | | 0BPh |
1Q8N|1|A|A|35 | 1Q8N|1|A|C|5 | ncWW | | |
1Q8N|1|A|A|35 | 1Q8N|1|A|G|34 | | s53 | |
1Q8N|1|A|A|35 | 1Q8N|1|A|U|36 | | s35 | |
1Q8N|1|A|A|35 | 1Q8N|1|A|U|4 | cWW | | |
1Q8N|1|A|A|9 | 1Q8N|1|A|A|9 | | | 0BPh |
1Q8N|1|A|C|10 | 1Q8N|1|A|A|27 | ncSW | | |
1Q8N|1|A|C|10 | 1Q8N|1|A|C|10 | | | n0BP |
1Q8N|1|A|C|10 | 1Q8N|1|A|G|23 | cWW | | |
1Q8N|1|A|C|10 | 1Q8N|1|A|G|8 | | s53 | |
1Q8N|1|A|C|10 | 1Q8N|1|A|U|11 | | s35 | |
1Q8N|1|A|C|14 | 1Q8N|1|A|C|14 | | | 0BPh |
1Q8N|1|A|C|14 | 1Q8N|1|A|G|13 | | s53 | |
1Q8N|1|A|C|14 | 1Q8N|1|A|G|15 | | s35 | |
1Q8N|1|A|C|14 | 1Q8N|1|A|G|19 | cWW | | |
1Q8N|1|A|C|20 | 1Q8N|1|A|C|20 | | | 0BPh |
1Q8N|1|A|C|20 | 1Q8N|1|A|C|21 | | s35 | |
1Q8N|1|A|C|20 | 1Q8N|1|A|G|13 | cWW | | |
1Q8N|1|A|C|20 | 1Q8N|1|A|G|19 | | s53 | |
1Q8N|1|A|C|21 | 1Q8N|1|A|A|22 | | s35 | |
1Q8N|1|A|C|21 | 1Q8N|1|A|C|20 | | s53 | |
1Q8N|1|A|C|21 | 1Q8N|1|A|C|21 | | | 0BPh |
1Q8N|1|A|C|21 | 1Q8N|1|A|G|12 | cWW | | |
1Q8N|1|A|C|21 | 1Q8N|1|A|G|13 | | ns55 | |
1Q8N|1|A|C|21 | 1Q8N|1|A|U|11 | ncWW | | |
1Q8N|1|A|C|28 | 1Q8N|1|A|A|27 | | s53 | |
1Q8N|1|A|C|28 | 1Q8N|1|A|G|23 | | ns53 | |
1Q8N|1|A|C|28 | 1Q8N|1|A|G|8 | cWW | | |
1Q8N|1|A|C|37 | 1Q8N|1|A|C|37 | | | 0BPh |
1Q8N|1|A|C|37 | 1Q8N|1|A|C|38 | | s35 | |
1Q8N|1|A|C|37 | 1Q8N|1|A|G|1 | ncWW | | |
1Q8N|1|A|C|37 | 1Q8N|1|A|G|2 | ncWW | | |
1Q8N|1|A|C|37 | 1Q8N|1|A|U|36 | | s53 | |
1Q8N|1|A|C|38 | 1Q8N|1|A|C|37 | | s53 | |
1Q8N|1|A|C|38 | 1Q8N|1|A|C|38 | | | 0BPh |
1Q8N|1|A|C|38 | 1Q8N|1|A|G|1 | cWW | | |
1Q8N|1|A|C|38 | 1Q8N|1|A|G|2 | | ns55 | |
1Q8N|1|A|C|5 | 1Q8N|1|A|A|35 | ncWW | | |
1Q8N|1|A|C|5 | 1Q8N|1|A|C|5 | | | 0BPh |
1Q8N|1|A|C|5 | 1Q8N|1|A|C|6 | | s35 | |
1Q8N|1|A|C|5 | 1Q8N|1|A|G|34 | cWW | | |
1Q8N|1|A|C|5 | 1Q8N|1|A|U|4 | | s53 | |
1Q8N|1|A|C|6 | 1Q8N|1|A|C|5 | | s53 | |
1Q8N|1|A|C|6 | 1Q8N|1|A|C|6 | | | 0BPh |
1Q8N|1|A|C|6 | 1Q8N|1|A|C|7 | | s35 | |
1Q8N|1|A|C|6 | 1Q8N|1|A|G|29 | | s33 | |
1Q8N|1|A|C|6 | 1Q8N|1|A|G|33 | cWW | | |
1Q8N|1|A|C|6 | 1Q8N|1|A|G|34 | | ns55 | |
1Q8N|1|A|C|7 | 1Q8N|1|A|C|6 | | s53 | n7BP |
1Q8N|1|A|C|7 | 1Q8N|1|A|C|7 | | | 0BPh |
1Q8N|1|A|C|7 | 1Q8N|1|A|G|29 | cWW | | |
1Q8N|1|A|G|1 | 1Q8N|1|A|C|37 | ncWW | | |
1Q8N|1|A|G|1 | 1Q8N|1|A|C|38 | cWW | | |
1Q8N|1|A|G|1 | 1Q8N|1|A|G|1 | | | 0BPh |
1Q8N|1|A|G|1 | 1Q8N|1|A|G|2 | | s35 | |
1Q8N|1|A|G|12 | 1Q8N|1|A|A|22 | | s55 | |
1Q8N|1|A|G|12 | 1Q8N|1|A|C|21 | cWW | | |
1Q8N|1|A|G|12 | 1Q8N|1|A|G|12 | | | 0BPh |
1Q8N|1|A|G|12 | 1Q8N|1|A|G|13 | | s35 | |
1Q8N|1|A|G|12 | 1Q8N|1|A|U|11 | | s53 | |
1Q8N|1|A|G|13 | 1Q8N|1|A|C|14 | | s35 | |
1Q8N|1|A|G|13 | 1Q8N|1|A|C|20 | cWW | | |
1Q8N|1|A|G|13 | 1Q8N|1|A|C|21 | | ns55 | |
1Q8N|1|A|G|13 | 1Q8N|1|A|G|12 | | s53 | |
1Q8N|1|A|G|13 | 1Q8N|1|A|G|13 | | | 0BPh |
1Q8N|1|A|G|15 | 1Q8N|1|A|A|18 | | s55 | |
1Q8N|1|A|G|15 | 1Q8N|1|A|C|14 | | s53 | |
1Q8N|1|A|G|15 | 1Q8N|1|A|G|15 | | | 0BPh |
1Q8N|1|A|G|15 | 1Q8N|1|A|G|19 | | s55 | |
1Q8N|1|A|G|17 | 1Q8N|1|A|A|16 | | s53 | |
1Q8N|1|A|G|17 | 1Q8N|1|A|A|18 | | s35 | |
1Q8N|1|A|G|17 | 1Q8N|1|A|G|17 | | | 0BPh |
1Q8N|1|A|G|19 | 1Q8N|1|A|A|18 | | s53 | |
1Q8N|1|A|G|19 | 1Q8N|1|A|C|14 | cWW | | |
1Q8N|1|A|G|19 | 1Q8N|1|A|C|20 | | s35 | |
1Q8N|1|A|G|19 | 1Q8N|1|A|G|15 | | s55 | |
1Q8N|1|A|G|19 | 1Q8N|1|A|G|19 | | | 0BPh |
1Q8N|1|A|G|2 | 1Q8N|1|A|A|3 | | s35 | |
1Q8N|1|A|G|2 | 1Q8N|1|A|C|37 | ncWW | | |
1Q8N|1|A|G|2 | 1Q8N|1|A|C|38 | | ns55 | |
1Q8N|1|A|G|2 | 1Q8N|1|A|G|1 | | s53 | |
1Q8N|1|A|G|2 | 1Q8N|1|A|G|2 | | | 0BPh |
1Q8N|1|A|G|23 | 1Q8N|1|A|A|22 | | s53 | |
1Q8N|1|A|G|23 | 1Q8N|1|A|A|27 | tSW | | |
1Q8N|1|A|G|23 | 1Q8N|1|A|C|10 | cWW | | |
1Q8N|1|A|G|23 | 1Q8N|1|A|C|28 | | ns35 | |
1Q8N|1|A|G|23 | 1Q8N|1|A|G|23 | | | 0BPh |
1Q8N|1|A|G|23 | 1Q8N|1|A|U|11 | | s55 | |
1Q8N|1|A|G|24 | 1Q8N|1|A|G|29 | ntWH | | |
1Q8N|1|A|G|24 | 1Q8N|1|A|U|25 | | | |
1Q8N|1|A|G|29 | 1Q8N|1|A|A|31 | tSW | | |
1Q8N|1|A|G|29 | 1Q8N|1|A|C|6 | | s33 | |
1Q8N|1|A|G|29 | 1Q8N|1|A|C|7 | cWW | | |
1Q8N|1|A|G|29 | 1Q8N|1|A|G|24 | ntHW | | |
1Q8N|1|A|G|29 | 1Q8N|1|A|G|29 | | | n0BP |
1Q8N|1|A|G|29 | 1Q8N|1|A|G|33 | | s35 | |
1Q8N|1|A|G|33 | 1Q8N|1|A|A|31 | | s53 | |
1Q8N|1|A|G|33 | 1Q8N|1|A|C|6 | cWW | | |
1Q8N|1|A|G|33 | 1Q8N|1|A|G|29 | | s53 | |
1Q8N|1|A|G|33 | 1Q8N|1|A|G|33 | | | n0BP |
1Q8N|1|A|G|34 | 1Q8N|1|A|A|35 | | s35 | |
1Q8N|1|A|G|34 | 1Q8N|1|A|C|5 | cWW | | |
1Q8N|1|A|G|34 | 1Q8N|1|A|C|6 | | ns55 | |
1Q8N|1|A|G|34 | 1Q8N|1|A|G|34 | | | 0BPh |
1Q8N|1|A|G|8 | 1Q8N|1|A|A|30 | ntSH | | |
1Q8N|1|A|G|8 | 1Q8N|1|A|C|10 | | s35 | |
1Q8N|1|A|G|8 | 1Q8N|1|A|C|28 | cWW | | |
1Q8N|1|A|U|11 | 1Q8N|1|A|A|22 | cWW | | |
1Q8N|1|A|U|11 | 1Q8N|1|A|A|26 | cSW | | |
1Q8N|1|A|U|11 | 1Q8N|1|A|C|10 | | s53 | |
1Q8N|1|A|U|11 | 1Q8N|1|A|C|21 | ncWW | | |
1Q8N|1|A|U|11 | 1Q8N|1|A|G|12 | | s35 | |
1Q8N|1|A|U|11 | 1Q8N|1|A|G|23 | | s55 | |
1Q8N|1|A|U|11 | 1Q8N|1|A|U|11 | | | 0BPh |
1Q8N|1|A|U|25 | 1Q8N|1|A|A|27 | | | |
1Q8N|1|A|U|25 | 1Q8N|1|A|G|24 | | | |
1Q8N|1|A|U|25 | 1Q8N|1|A|U|25 | | | 0BPh |
1Q8N|1|A|U|32 | 1Q8N|1|A|A|31 | | | |
1Q8N|1|A|U|32 | 1Q8N|1|A|G|33 | | | n0BP |
1Q8N|1|A|U|32 | 1Q8N|1|A|U|32 | | | n9BP |
1Q8N|1|A|U|36 | 1Q8N|1|A|A|3 | cWW | | |
1Q8N|1|A|U|36 | 1Q8N|1|A|A|35 | | s53 | |
1Q8N|1|A|U|36 | 1Q8N|1|A|C|37 | | s35 | |
1Q8N|1|A|U|36 | 1Q8N|1|A|U|36 | | | 0BPh |
1Q8N|1|A|U|4 | 1Q8N|1|A|A|3 | | s53 | |
1Q8N|1|A|U|4 | 1Q8N|1|A|A|35 | cWW | | |
1Q8N|1|A|U|4 | 1Q8N|1|A|C|5 | | s35 | |
1Q8N|1|A|U|4 | 1Q8N|1|A|U|4 | | | 0BPh |
Base-Pairs | Count (15) | Relative Frequency |
---|
cWW | 12 | 0.800 |
cWS | 1 | 0.067 |
tWS | 2 | 0.133 |
Base-Phosphate | Count (27) | Relative Frequency |
---|
0BPh | 27 | 1.000 |
Base-Stacking | Count (16) | Relative Frequency |
---|
s33 | 2 | 0.125 |
s53 | 10 | 0.625 |
s55 | 4 | 0.250 |