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NDB ID: 1QES  PDB ID: 1QES 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1QES|1|A|A|31QES|1|A|A|3n0BP
1QES|1|A|A|31QES|1|A|G|2s53
1QES|1|A|A|31QES|1|A|G|4s35
1QES|1|A|A|31QES|1|B|C|15s55
1QES|1|A|A|31QES|1|B|U|14cWW
1QES|1|A|C|71QES|1|A|C|70BPh
1QES|1|A|C|71QES|1|A|C|8s35
1QES|1|A|C|71QES|1|A|U|6s53
1QES|1|A|C|71QES|1|B|A|11ns55
1QES|1|A|C|71QES|1|B|G|10cWW
1QES|1|A|C|81QES|1|A|C|7s53
1QES|1|A|C|81QES|1|A|C|80BPh
1QES|1|A|C|81QES|1|B|G|10s55
1QES|1|A|C|81QES|1|B|G|9cWW
1QES|1|A|G|11QES|1|A|G|10BPh
1QES|1|A|G|11QES|1|A|G|2s35
1QES|1|A|G|11QES|1|B|C|16cWW
1QES|1|A|G|21QES|1|A|A|3s35
1QES|1|A|G|21QES|1|A|G|1s53
1QES|1|A|G|21QES|1|A|G|20BPh
1QES|1|A|G|21QES|1|B|C|15cWW
1QES|1|A|G|21QES|1|B|C|16s55
1QES|1|A|G|41QES|1|A|A|3s53
1QES|1|A|G|41QES|1|A|G|40BPh
1QES|1|A|G|41QES|1|A|U|5s35
1QES|1|A|G|41QES|1|B|U|13cWW
1QES|1|A|G|41QES|1|B|U|14s55
1QES|1|A|U|51QES|1|A|G|4s53
1QES|1|A|U|51QES|1|A|U|50BPh
1QES|1|A|U|51QES|1|A|U|6s35
1QES|1|A|U|51QES|1|B|G|12cWW
1QES|1|A|U|61QES|1|A|C|7s35
1QES|1|A|U|61QES|1|A|U|5s53
1QES|1|A|U|61QES|1|A|U|60BPh
1QES|1|A|U|61QES|1|B|A|11cWW
1QES|1|A|U|61QES|1|B|G|12s55
1QES|1|B|A|111QES|1|A|C|7ns55
1QES|1|B|A|111QES|1|A|U|6cWW
1QES|1|B|A|111QES|1|B|A|110BPh
1QES|1|B|A|111QES|1|B|G|10s53
1QES|1|B|A|111QES|1|B|G|12s35
1QES|1|B|C|151QES|1|A|A|3s55
1QES|1|B|C|151QES|1|A|G|2cWW
1QES|1|B|C|151QES|1|B|C|150BPh
1QES|1|B|C|151QES|1|B|C|16s35
1QES|1|B|C|151QES|1|B|U|14s53
1QES|1|B|C|161QES|1|A|G|1cWW
1QES|1|B|C|161QES|1|A|G|2s55
1QES|1|B|C|161QES|1|B|C|15s53
1QES|1|B|C|161QES|1|B|C|160BPh
1QES|1|B|G|101QES|1|A|C|7cWW
1QES|1|B|G|101QES|1|A|C|8s55
1QES|1|B|G|101QES|1|B|A|11s35
1QES|1|B|G|101QES|1|B|G|100BPh
1QES|1|B|G|101QES|1|B|G|9s53
1QES|1|B|G|121QES|1|A|U|5cWW
1QES|1|B|G|121QES|1|A|U|6s55
1QES|1|B|G|121QES|1|B|A|11s53
1QES|1|B|G|121QES|1|B|G|120BPh
1QES|1|B|G|121QES|1|B|U|13s35
1QES|1|B|G|91QES|1|A|C|8cWW
1QES|1|B|G|91QES|1|B|G|10s35
1QES|1|B|G|91QES|1|B|G|90BPh
1QES|1|B|U|131QES|1|A|G|4cWW
1QES|1|B|U|131QES|1|B|G|12s53
1QES|1|B|U|131QES|1|B|U|130BPh
1QES|1|B|U|131QES|1|B|U|14s35
1QES|1|B|U|141QES|1|A|A|3cWW
1QES|1|B|U|141QES|1|A|G|4s55
1QES|1|B|U|141QES|1|B|C|15s35
1QES|1|B|U|141QES|1|B|U|13s53
1QES|1|B|U|141QES|1|B|U|140BPh


Base-PairsCount (8)Relative Frequency
cWW81.000
Base-PhosphateCount (15)Relative Frequency
0BPh151.000
Base-StackingCount (10)Relative Frequency
s5350.500
s5550.500

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)