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NDB ID: 1QWA  PDB ID: 1QWA 

RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1QWA|1|A|A|131QWA|1|A|A|130BPh
1QWA|1|A|A|131QWA|1|A|G|12s55
1QWA|1|A|A|131QWA|1|A|G|14ns35
1QWA|1|A|A|131QWA|1|A|U|8cWW
1QWA|1|A|A|181QWA|1|A|A|180BPh
1QWA|1|A|A|181QWA|1|A|C|17ns53
1QWA|1|A|A|181QWA|1|A|G|5ns55
1QWA|1|A|A|181QWA|1|A|U|19s35
1QWA|1|A|A|181QWA|1|A|U|4cWW
1QWA|1|A|A|31QWA|1|A|A|3n0BP
1QWA|1|A|A|31QWA|1|A|C|20ns55
1QWA|1|A|A|31QWA|1|A|G|2ns53
1QWA|1|A|A|31QWA|1|A|U|19cWW
1QWA|1|A|A|31QWA|1|A|U|4ns35
1QWA|1|A|C|101QWA|1|A|C|100BPh
1QWA|1|A|C|101QWA|1|A|C|9
1QWA|1|A|C|101QWA|1|A|G|12
1QWA|1|A|C|111QWA|1|A|C|110BPh
1QWA|1|A|C|111QWA|1|A|C|9s53
1QWA|1|A|C|111QWA|1|A|G|12s53
1QWA|1|A|C|171QWA|1|A|A|18ns35
1QWA|1|A|C|171QWA|1|A|C|170BPh
1QWA|1|A|C|171QWA|1|A|G|16ns53
1QWA|1|A|C|171QWA|1|A|G|5cWW
1QWA|1|A|C|201QWA|1|A|A|3ns55
1QWA|1|A|C|201QWA|1|A|C|200BPh
1QWA|1|A|C|201QWA|1|A|C|21s35
1QWA|1|A|C|201QWA|1|A|G|2cWW
1QWA|1|A|C|201QWA|1|A|U|19ns53
1QWA|1|A|C|211QWA|1|A|C|20s53
1QWA|1|A|C|211QWA|1|A|C|210BPh
1QWA|1|A|C|211QWA|1|A|G|1cWW
1QWA|1|A|C|211QWA|1|A|G|2s55
1QWA|1|A|C|61QWA|1|A|C|6n0BP
1QWA|1|A|C|61QWA|1|A|C|7ns35
1QWA|1|A|C|61QWA|1|A|G|16cWW
1QWA|1|A|C|61QWA|1|A|G|5ns53
1QWA|1|A|C|71QWA|1|A|C|6ns53
1QWA|1|A|C|71QWA|1|A|C|70BPh
1QWA|1|A|C|71QWA|1|A|G|14cWW
1QWA|1|A|C|91QWA|1|A|C|11s35
1QWA|1|A|C|91QWA|1|A|C|90BPh
1QWA|1|A|C|91QWA|1|A|G|12ntSW
1QWA|1|A|C|91QWA|1|A|U|8s53
1QWA|1|A|G|11QWA|1|A|C|21cWW
1QWA|1|A|G|11QWA|1|A|G|1n0BP
1QWA|1|A|G|11QWA|1|A|G|2s35
1QWA|1|A|G|121QWA|1|A|A|13s55
1QWA|1|A|G|121QWA|1|A|C|10
1QWA|1|A|G|121QWA|1|A|C|11s35
1QWA|1|A|G|121QWA|1|A|C|9ntWS
1QWA|1|A|G|141QWA|1|A|A|13ns53
1QWA|1|A|G|141QWA|1|A|C|7cWW
1QWA|1|A|G|141QWA|1|A|G|140BPh
1QWA|1|A|G|141QWA|1|A|U|8ns55
1QWA|1|A|G|161QWA|1|A|C|17ns35
1QWA|1|A|G|161QWA|1|A|C|6cWW
1QWA|1|A|G|161QWA|1|A|U|15ns530BPh
1QWA|1|A|G|21QWA|1|A|A|3ns35
1QWA|1|A|G|21QWA|1|A|C|20cWW
1QWA|1|A|G|21QWA|1|A|C|21s55
1QWA|1|A|G|21QWA|1|A|G|1s53n0BP
1QWA|1|A|G|21QWA|1|A|G|20BPh
1QWA|1|A|G|51QWA|1|A|A|18ns55
1QWA|1|A|G|51QWA|1|A|C|17cWW
1QWA|1|A|G|51QWA|1|A|C|6ns35
1QWA|1|A|G|51QWA|1|A|G|50BPh
1QWA|1|A|G|51QWA|1|A|U|4ns53
1QWA|1|A|U|151QWA|1|A|G|14
1QWA|1|A|U|151QWA|1|A|G|16ns35n0BP
1QWA|1|A|U|151QWA|1|A|U|150BPh
1QWA|1|A|U|191QWA|1|A|A|18s53
1QWA|1|A|U|191QWA|1|A|A|3cWW
1QWA|1|A|U|191QWA|1|A|C|20ns35
1QWA|1|A|U|191QWA|1|A|U|190BPh
1QWA|1|A|U|41QWA|1|A|A|18cWW
1QWA|1|A|U|41QWA|1|A|A|3ns53
1QWA|1|A|U|41QWA|1|A|G|5ns35
1QWA|1|A|U|41QWA|1|A|U|40BPh
1QWA|1|A|U|81QWA|1|A|A|13cWW
1QWA|1|A|U|81QWA|1|A|C|7
1QWA|1|A|U|81QWA|1|A|C|9s35
1QWA|1|A|U|81QWA|1|A|G|14ns55
1QWA|1|A|U|81QWA|1|A|U|80BPh


Base-PairsCount (8)Relative Frequency
cWW81.000
Base-PhosphateCount (17)Relative Frequency
0BPh171.000
Base-StackingCount (5)Relative Frequency
s5330.600
s5520.400

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)

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