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As of 18-May-2022 number of released structures: 12082
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NDB ID: 1R2P  PDB ID: 1R2P 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1R2P|1|A|A|131R2P|1|A|A|130BPh
1R2P|1|A|A|131R2P|1|A|C|21ns55
1R2P|1|A|A|131R2P|1|A|G|12s53
1R2P|1|A|A|131R2P|1|A|U|14s35
1R2P|1|A|A|131R2P|1|A|U|20cWW
1R2P|1|A|A|161R2P|1|A|A|160BPh
1R2P|1|A|A|161R2P|1|A|A|17s35
1R2P|1|A|A|171R2P|1|A|A|16s53
1R2P|1|A|A|171R2P|1|A|A|17n0BP
1R2P|1|A|A|171R2P|1|A|A|18s35
1R2P|1|A|A|181R2P|1|A|A|17s53
1R2P|1|A|A|181R2P|1|A|A|180BPh
1R2P|1|A|A|181R2P|1|A|G|15tHS
1R2P|1|A|A|181R2P|1|A|G|19s35
1R2P|1|A|A|21R2P|1|A|A|20BPh
1R2P|1|A|A|21R2P|1|A|C|34s55
1R2P|1|A|A|21R2P|1|A|G|1s53
1R2P|1|A|A|21R2P|1|A|G|3s35
1R2P|1|A|A|21R2P|1|A|U|33cWW
1R2P|1|A|A|241R2P|1|A|A|240BPh
1R2P|1|A|A|241R2P|1|A|C|25s35
1R2P|1|A|A|241R2P|1|A|G|10s55
1R2P|1|A|A|281R2P|1|A|A|280BPh
1R2P|1|A|A|281R2P|1|A|A|8s55
1R2P|1|A|A|281R2P|1|A|C|29s35
1R2P|1|A|A|281R2P|1|A|G|26s55
1R2P|1|A|A|281R2P|1|A|U|27s53
1R2P|1|A|A|281R2P|1|A|U|7cWW
1R2P|1|A|A|81R2P|1|A|A|28s55
1R2P|1|A|A|81R2P|1|A|A|8n0BP
1R2P|1|A|A|81R2P|1|A|G|26
1R2P|1|A|A|81R2P|1|A|U|27ns33
1R2P|1|A|A|81R2P|1|A|U|7ns53
1R2P|1|A|A|81R2P|1|A|U|9s35
1R2P|1|A|C|111R2P|1|A|C|110BPh
1R2P|1|A|C|111R2P|1|A|G|10s53
1R2P|1|A|C|111R2P|1|A|G|12s35
1R2P|1|A|C|111R2P|1|A|G|22cWW
1R2P|1|A|C|211R2P|1|A|A|13ns55
1R2P|1|A|C|211R2P|1|A|C|210BPh
1R2P|1|A|C|211R2P|1|A|G|12cWW
1R2P|1|A|C|211R2P|1|A|G|22s35
1R2P|1|A|C|211R2P|1|A|U|20s53
1R2P|1|A|C|231R2P|1|A|C|230BPh
1R2P|1|A|C|231R2P|1|A|G|10cWW
1R2P|1|A|C|231R2P|1|A|G|22s53
1R2P|1|A|C|251R2P|1|A|A|24s53
1R2P|1|A|C|251R2P|1|A|C|250BPh
1R2P|1|A|C|251R2P|1|A|U|9s33
1R2P|1|A|C|291R2P|1|A|A|28s53
1R2P|1|A|C|291R2P|1|A|C|290BPh
1R2P|1|A|C|291R2P|1|A|G|30s35
1R2P|1|A|C|291R2P|1|A|G|6cWW
1R2P|1|A|C|341R2P|1|A|A|2s55
1R2P|1|A|C|341R2P|1|A|C|340BPh
1R2P|1|A|C|341R2P|1|A|G|1cWW
1R2P|1|A|C|341R2P|1|A|U|33s53
1R2P|1|A|C|41R2P|1|A|C|40BPh
1R2P|1|A|C|41R2P|1|A|C|5s35
1R2P|1|A|C|41R2P|1|A|G|3s53
1R2P|1|A|C|41R2P|1|A|G|31cWW
1R2P|1|A|C|51R2P|1|A|C|4s53
1R2P|1|A|C|51R2P|1|A|C|50BPh
1R2P|1|A|C|51R2P|1|A|G|30cWW
1R2P|1|A|C|51R2P|1|A|G|31s55
1R2P|1|A|C|51R2P|1|A|G|6s35
1R2P|1|A|G|11R2P|1|A|A|2s35
1R2P|1|A|G|11R2P|1|A|C|34cWW
1R2P|1|A|G|11R2P|1|A|G|10BPh
1R2P|1|A|G|101R2P|1|A|A|24s55
1R2P|1|A|G|101R2P|1|A|C|11s35
1R2P|1|A|G|101R2P|1|A|C|23cWW
1R2P|1|A|G|101R2P|1|A|G|100BPh
1R2P|1|A|G|121R2P|1|A|A|13s35
1R2P|1|A|G|121R2P|1|A|C|11s53
1R2P|1|A|G|121R2P|1|A|C|21cWW
1R2P|1|A|G|121R2P|1|A|G|120BPh
1R2P|1|A|G|121R2P|1|A|G|22s55
1R2P|1|A|G|151R2P|1|A|A|18tSHn3BP
1R2P|1|A|G|151R2P|1|A|G|150BPh
1R2P|1|A|G|151R2P|1|A|U|14s53
1R2P|1|A|G|191R2P|1|A|A|18s53
1R2P|1|A|G|191R2P|1|A|G|190BPh
1R2P|1|A|G|191R2P|1|A|U|14cWW
1R2P|1|A|G|191R2P|1|A|U|20s35
1R2P|1|A|G|221R2P|1|A|C|11cWW
1R2P|1|A|G|221R2P|1|A|C|21s53
1R2P|1|A|G|221R2P|1|A|C|23s35
1R2P|1|A|G|221R2P|1|A|G|12s55
1R2P|1|A|G|221R2P|1|A|G|220BPh
1R2P|1|A|G|261R2P|1|A|A|28s55
1R2P|1|A|G|261R2P|1|A|U|27
1R2P|1|A|G|31R2P|1|A|A|2s53
1R2P|1|A|G|31R2P|1|A|C|4s35
1R2P|1|A|G|31R2P|1|A|G|30BPh
1R2P|1|A|G|31R2P|1|A|U|32cWW
1R2P|1|A|G|31R2P|1|A|U|33s55
1R2P|1|A|G|301R2P|1|A|C|29s53
1R2P|1|A|G|301R2P|1|A|C|5cWW
1R2P|1|A|G|301R2P|1|A|G|300BPh
1R2P|1|A|G|301R2P|1|A|G|31s35
1R2P|1|A|G|301R2P|1|A|G|6s55
1R2P|1|A|G|311R2P|1|A|C|4cWW
1R2P|1|A|G|311R2P|1|A|C|5s55
1R2P|1|A|G|311R2P|1|A|G|30s53
1R2P|1|A|G|311R2P|1|A|G|310BPh
1R2P|1|A|G|311R2P|1|A|U|32s35
1R2P|1|A|G|61R2P|1|A|C|29cWW
1R2P|1|A|G|61R2P|1|A|C|5s53
1R2P|1|A|G|61R2P|1|A|G|30s55
1R2P|1|A|G|61R2P|1|A|G|60BPh
1R2P|1|A|G|61R2P|1|A|U|7s35
1R2P|1|A|U|141R2P|1|A|A|13s53
1R2P|1|A|U|141R2P|1|A|G|15s35
1R2P|1|A|U|141R2P|1|A|G|19cWW
1R2P|1|A|U|141R2P|1|A|U|140BPh
1R2P|1|A|U|201R2P|1|A|A|13cWW
1R2P|1|A|U|201R2P|1|A|C|21s35
1R2P|1|A|U|201R2P|1|A|G|19s53
1R2P|1|A|U|201R2P|1|A|U|200BPh
1R2P|1|A|U|271R2P|1|A|A|28s35
1R2P|1|A|U|271R2P|1|A|A|8ns33
1R2P|1|A|U|271R2P|1|A|G|26
1R2P|1|A|U|271R2P|1|A|U|270BPh
1R2P|1|A|U|321R2P|1|A|G|3cWW
1R2P|1|A|U|321R2P|1|A|G|31s53
1R2P|1|A|U|321R2P|1|A|U|320BPh
1R2P|1|A|U|321R2P|1|A|U|33ns35
1R2P|1|A|U|331R2P|1|A|A|2cWW
1R2P|1|A|U|331R2P|1|A|C|34s35
1R2P|1|A|U|331R2P|1|A|G|3s55
1R2P|1|A|U|331R2P|1|A|U|32ns53
1R2P|1|A|U|331R2P|1|A|U|330BPh
1R2P|1|A|U|71R2P|1|A|A|28cWW
1R2P|1|A|U|71R2P|1|A|A|8ns35
1R2P|1|A|U|71R2P|1|A|G|6s53
1R2P|1|A|U|71R2P|1|A|U|70BPh
1R2P|1|A|U|91R2P|1|A|A|8s53
1R2P|1|A|U|91R2P|1|A|C|25s33
1R2P|1|A|U|91R2P|1|A|U|90BPh


Base-PairsCount (13)Relative Frequency
cWW120.923
tHS10.077
Base-PhosphateCount (31)Relative Frequency
0BPh311.000
Base-StackingCount (18)Relative Frequency
s3310.056
s5390.500
s5580.444

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)