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NDB ID: PR0134  PDB ID: 1WNE 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1WNE|1|B|A|9031WNE|1|B|U|904ns35
1WNE|1|B|C|9081WNE|1|B|C|9080BPh
1WNE|1|B|C|9081WNE|1|B|C|909s35
1WNE|1|B|C|9081WNE|1|B|G|907s53
1WNE|1|B|C|9081WNE|1|C|G|917cWW
1WNE|1|B|C|9091WNE|1|B|C|908s53
1WNE|1|B|C|9091WNE|1|B|C|9090BPh
1WNE|1|B|C|9091WNE|1|C|G|916cWW
1WNE|1|B|C|9091WNE|1|C|G|917s55
1WNE|1|B|G|9051WNE|1|B|G|9050BPh
1WNE|1|B|G|9051WNE|1|B|G|906s35
1WNE|1|B|G|9051WNE|1|B|U|904ns53
1WNE|1|B|G|9051WNE|1|C|C|920cWW
1WNE|1|B|G|9061WNE|1|B|G|905s53
1WNE|1|B|G|9061WNE|1|B|G|9060BPh
1WNE|1|B|G|9061WNE|1|B|G|907s35
1WNE|1|B|G|9061WNE|1|C|C|918ncWW
1WNE|1|B|G|9061WNE|1|C|C|919cWW
1WNE|1|B|G|9061WNE|1|C|C|920s55
1WNE|1|B|G|9071WNE|1|B|C|908s35
1WNE|1|B|G|9071WNE|1|B|G|906s53
1WNE|1|B|G|9071WNE|1|C|C|918ntHW
1WNE|1|B|G|9071WNE|1|C|C|919ns55
1WNE|1|B|U|9041WNE|1|B|A|903ns53
1WNE|1|B|U|9041WNE|1|B|G|905ns35
1WNE|1|B|U|9041WNE|1|B|U|9040BPh
1WNE|1|B|U|9041WNE|1|C|C|920ncWW
1WNE|1|C|C|9181WNE|1|B|G|906ncWW
1WNE|1|C|C|9181WNE|1|B|G|907ntWH
1WNE|1|C|C|9181WNE|1|C|C|9180BPh
1WNE|1|C|C|9181WNE|1|C|C|919s35
1WNE|1|C|C|9181WNE|1|C|G|917s53
1WNE|1|C|C|9191WNE|1|B|G|906cWW
1WNE|1|C|C|9191WNE|1|B|G|907ns55
1WNE|1|C|C|9191WNE|1|C|C|918s53
1WNE|1|C|C|9191WNE|1|C|C|9190BPh
1WNE|1|C|C|9191WNE|1|C|C|920s35
1WNE|1|C|C|9201WNE|1|B|G|905cWW
1WNE|1|C|C|9201WNE|1|B|G|906s55
1WNE|1|C|C|9201WNE|1|B|U|904ncWW
1WNE|1|C|C|9201WNE|1|C|C|919s53
1WNE|1|C|C|9201WNE|1|C|C|9200BPh
1WNE|1|C|G|9161WNE|1|B|C|909cWW
1WNE|1|C|G|9161WNE|1|C|G|917s35
1WNE|1|C|G|9171WNE|1|B|C|908cWW
1WNE|1|C|G|9171WNE|1|B|C|909s55
1WNE|1|C|G|9171WNE|1|C|C|918s35
1WNE|1|C|G|9171WNE|1|C|G|916s53
1WNE|1|C|G|9171WNE|1|C|G|9170BPh


Base-PairsCount (4)Relative Frequency
cWW41.000
Base-PhosphateCount (9)Relative Frequency
0BPh91.000
Base-StackingCount (4)Relative Frequency
s5320.500
s5520.500

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)