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As of 18-May-2022 number of released structures: 12082
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NDB ID: UR0046  PDB ID: 1XPE 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1XPE|1|A|A|161XPE|1|A|A|160BPh
1XPE|1|A|A|161XPE|1|A|C|15s53
1XPE|1|A|A|161XPE|1|A|C|17s35
1XPE|1|A|A|161XPE|1|B|G|10s55
1XPE|1|A|A|211XPE|1|A|A|21n0BP
1XPE|1|A|A|211XPE|1|A|A|22s35
1XPE|1|A|A|211XPE|1|A|C|20s53
1XPE|1|A|A|211XPE|1|A|G|4s55
1XPE|1|A|A|211XPE|1|A|U|3cWW
1XPE|1|A|A|221XPE|1|A|A|21s53
1XPE|1|A|A|221XPE|1|A|A|220BPh
1XPE|1|A|A|221XPE|1|A|G|23s35
1XPE|1|A|A|221XPE|1|A|U|2cWW
1XPE|1|A|A|221XPE|1|A|U|3s55
1XPE|1|A|A|81XPE|1|A|A|8n0BP
1XPE|1|A|A|81XPE|1|A|A|9s35
1XPE|1|A|A|91XPE|1|A|A|8s53
1XPE|1|A|A|91XPE|1|A|A|90BPh
1XPE|1|A|C|11XPE|1|A|C|10BPh
1XPE|1|A|C|11XPE|1|A|G|23cWW
1XPE|1|A|C|11XPE|1|A|U|2s35
1XPE|1|A|C|111XPE|1|A|C|110BPh
1XPE|1|A|C|111XPE|1|A|G|10s53
1XPE|1|A|C|111XPE|1|A|G|12s35
1XPE|1|A|C|111XPE|1|B|G|14cWW
1XPE|1|A|C|131XPE|1|A|C|130BPh
1XPE|1|A|C|131XPE|1|A|G|12s53
1XPE|1|A|C|131XPE|1|A|G|14s35
1XPE|1|A|C|131XPE|1|B|G|12cWW
1XPE|1|A|C|151XPE|1|A|A|16s35
1XPE|1|A|C|151XPE|1|A|C|150BPh
1XPE|1|A|C|151XPE|1|A|G|14s53
1XPE|1|A|C|151XPE|1|B|G|10cWW
1XPE|1|A|C|171XPE|1|A|A|16s53
1XPE|1|A|C|171XPE|1|A|C|170BPh
1XPE|1|A|C|171XPE|1|A|G|18s35
1XPE|1|A|C|171XPE|1|A|G|7cWW
1XPE|1|A|C|201XPE|1|A|A|21s35
1XPE|1|A|C|201XPE|1|A|C|200BPh
1XPE|1|A|C|201XPE|1|A|G|19s53
1XPE|1|A|C|201XPE|1|A|G|4cWW
1XPE|1|A|C|51XPE|1|A|C|50BPh
1XPE|1|A|C|51XPE|1|A|G|19cWW
1XPE|1|A|C|51XPE|1|A|G|4s53
1XPE|1|A|C|51XPE|1|A|U|6s35
1XPE|1|A|G|101XPE|1|A|C|11s35
1XPE|1|A|G|101XPE|1|A|G|10n0BP
1XPE|1|A|G|101XPE|1|B|A|16s55
1XPE|1|A|G|101XPE|1|B|C|15cWW
1XPE|1|A|G|121XPE|1|A|C|11s53
1XPE|1|A|G|121XPE|1|A|C|13s35
1XPE|1|A|G|121XPE|1|A|G|120BPh
1XPE|1|A|G|121XPE|1|B|C|13cWW
1XPE|1|A|G|121XPE|1|B|G|14s55
1XPE|1|A|G|141XPE|1|A|C|13s53
1XPE|1|A|G|141XPE|1|A|C|15s35
1XPE|1|A|G|141XPE|1|A|G|140BPh
1XPE|1|A|G|141XPE|1|B|C|11cWW
1XPE|1|A|G|141XPE|1|B|G|12s55
1XPE|1|A|G|181XPE|1|A|C|17s53
1XPE|1|A|G|181XPE|1|A|G|180BPh
1XPE|1|A|G|181XPE|1|A|G|19s35
1XPE|1|A|G|181XPE|1|A|G|7s55
1XPE|1|A|G|181XPE|1|A|U|6cWW
1XPE|1|A|G|191XPE|1|A|C|20s35
1XPE|1|A|G|191XPE|1|A|C|5cWW
1XPE|1|A|G|191XPE|1|A|G|18s53
1XPE|1|A|G|191XPE|1|A|G|190BPh
1XPE|1|A|G|191XPE|1|A|U|6s55
1XPE|1|A|G|231XPE|1|A|A|22s53
1XPE|1|A|G|231XPE|1|A|C|1cWW
1XPE|1|A|G|231XPE|1|A|G|230BPh
1XPE|1|A|G|231XPE|1|A|U|2s55
1XPE|1|A|G|41XPE|1|A|A|21s55
1XPE|1|A|G|41XPE|1|A|C|20cWW
1XPE|1|A|G|41XPE|1|A|C|5s35
1XPE|1|A|G|41XPE|1|A|G|40BPh
1XPE|1|A|G|41XPE|1|A|U|3s53
1XPE|1|A|G|71XPE|1|A|C|17cWW
1XPE|1|A|G|71XPE|1|A|G|18s55
1XPE|1|A|G|71XPE|1|A|G|70BPh
1XPE|1|A|G|71XPE|1|A|U|6s53
1XPE|1|A|U|21XPE|1|A|A|22cWW
1XPE|1|A|U|21XPE|1|A|C|1s53
1XPE|1|A|U|21XPE|1|A|G|23s55
1XPE|1|A|U|21XPE|1|A|U|20BPh
1XPE|1|A|U|21XPE|1|A|U|3s35
1XPE|1|A|U|31XPE|1|A|A|21cWW
1XPE|1|A|U|31XPE|1|A|A|22s55
1XPE|1|A|U|31XPE|1|A|G|4s35
1XPE|1|A|U|31XPE|1|A|U|2s53
1XPE|1|A|U|31XPE|1|A|U|30BPh
1XPE|1|A|U|61XPE|1|A|C|5s53
1XPE|1|A|U|61XPE|1|A|G|18cWW
1XPE|1|A|U|61XPE|1|A|G|19s55
1XPE|1|A|U|61XPE|1|A|G|7s35
1XPE|1|A|U|61XPE|1|A|U|60BPh
1XPE|1|B|A|161XPE|1|A|G|10s55
1XPE|1|B|A|161XPE|1|B|A|160BPh
1XPE|1|B|A|161XPE|1|B|C|15s53
1XPE|1|B|A|161XPE|1|B|C|17s35
1XPE|1|B|A|211XPE|1|B|A|210BPh
1XPE|1|B|A|211XPE|1|B|A|22s35
1XPE|1|B|A|211XPE|1|B|C|20s53
1XPE|1|B|A|211XPE|1|B|G|4s55
1XPE|1|B|A|211XPE|1|B|U|3cWW
1XPE|1|B|A|221XPE|1|B|A|21s53
1XPE|1|B|A|221XPE|1|B|A|220BPh
1XPE|1|B|A|221XPE|1|B|G|23s35
1XPE|1|B|A|221XPE|1|B|U|2cWW
1XPE|1|B|A|221XPE|1|B|U|3s55
1XPE|1|B|A|81XPE|1|B|A|9s35
1XPE|1|B|A|91XPE|1|B|A|8s53
1XPE|1|B|A|91XPE|1|B|A|90BPh
1XPE|1|B|C|11XPE|1|B|C|10BPh
1XPE|1|B|C|11XPE|1|B|G|23cWW
1XPE|1|B|C|11XPE|1|B|U|2s35
1XPE|1|B|C|111XPE|1|A|G|14cWW
1XPE|1|B|C|111XPE|1|B|C|110BPh
1XPE|1|B|C|111XPE|1|B|G|10s53
1XPE|1|B|C|111XPE|1|B|G|12s35
1XPE|1|B|C|131XPE|1|A|G|12cWW
1XPE|1|B|C|131XPE|1|B|C|130BPh
1XPE|1|B|C|131XPE|1|B|G|12s53
1XPE|1|B|C|131XPE|1|B|G|14s35
1XPE|1|B|C|151XPE|1|A|G|10cWW
1XPE|1|B|C|151XPE|1|B|A|16s35
1XPE|1|B|C|151XPE|1|B|C|150BPh
1XPE|1|B|C|151XPE|1|B|G|14s53
1XPE|1|B|C|171XPE|1|B|A|16s53
1XPE|1|B|C|171XPE|1|B|C|170BPh
1XPE|1|B|C|171XPE|1|B|G|18s35
1XPE|1|B|C|171XPE|1|B|G|7cWW
1XPE|1|B|C|201XPE|1|B|A|21s35
1XPE|1|B|C|201XPE|1|B|C|200BPh
1XPE|1|B|C|201XPE|1|B|G|19s53
1XPE|1|B|C|201XPE|1|B|G|4cWW
1XPE|1|B|C|51XPE|1|B|C|50BPh
1XPE|1|B|C|51XPE|1|B|G|19cWW
1XPE|1|B|C|51XPE|1|B|G|4s53
1XPE|1|B|C|51XPE|1|B|U|6s35
1XPE|1|B|G|101XPE|1|A|A|16s55
1XPE|1|B|G|101XPE|1|A|C|15cWW
1XPE|1|B|G|101XPE|1|B|C|11s35
1XPE|1|B|G|101XPE|1|B|G|100BPh
1XPE|1|B|G|121XPE|1|A|C|13cWW
1XPE|1|B|G|121XPE|1|A|G|14s55
1XPE|1|B|G|121XPE|1|B|C|11s53
1XPE|1|B|G|121XPE|1|B|C|13s35
1XPE|1|B|G|121XPE|1|B|G|120BPh
1XPE|1|B|G|141XPE|1|A|C|11cWW
1XPE|1|B|G|141XPE|1|A|G|12s55
1XPE|1|B|G|141XPE|1|B|C|13s53
1XPE|1|B|G|141XPE|1|B|C|15s35
1XPE|1|B|G|141XPE|1|B|G|140BPh
1XPE|1|B|G|181XPE|1|B|C|17s53
1XPE|1|B|G|181XPE|1|B|G|180BPh
1XPE|1|B|G|181XPE|1|B|G|19s35
1XPE|1|B|G|181XPE|1|B|G|7s55
1XPE|1|B|G|181XPE|1|B|U|6cWW
1XPE|1|B|G|191XPE|1|B|C|20s35
1XPE|1|B|G|191XPE|1|B|C|5cWW
1XPE|1|B|G|191XPE|1|B|G|18s53
1XPE|1|B|G|191XPE|1|B|G|190BPh
1XPE|1|B|G|191XPE|1|B|U|6s55
1XPE|1|B|G|231XPE|1|B|A|22s53
1XPE|1|B|G|231XPE|1|B|C|1cWW
1XPE|1|B|G|231XPE|1|B|G|230BPh
1XPE|1|B|G|231XPE|1|B|U|2s55
1XPE|1|B|G|41XPE|1|B|A|21s55
1XPE|1|B|G|41XPE|1|B|C|20cWW
1XPE|1|B|G|41XPE|1|B|C|5s35
1XPE|1|B|G|41XPE|1|B|G|40BPh
1XPE|1|B|G|41XPE|1|B|U|3s53
1XPE|1|B|G|71XPE|1|B|C|17cWW
1XPE|1|B|G|71XPE|1|B|G|18s55
1XPE|1|B|G|71XPE|1|B|G|70BPh
1XPE|1|B|G|71XPE|1|B|U|6s53
1XPE|1|B|U|21XPE|1|B|A|22cWW
1XPE|1|B|U|21XPE|1|B|C|1s53
1XPE|1|B|U|21XPE|1|B|G|23s55
1XPE|1|B|U|21XPE|1|B|U|20BPh
1XPE|1|B|U|21XPE|1|B|U|3s35
1XPE|1|B|U|31XPE|1|B|A|21cWW
1XPE|1|B|U|31XPE|1|B|A|22s55
1XPE|1|B|U|31XPE|1|B|G|4s35
1XPE|1|B|U|31XPE|1|B|U|2s53
1XPE|1|B|U|31XPE|1|B|U|30BPh
1XPE|1|B|U|61XPE|1|B|C|5s53
1XPE|1|B|U|61XPE|1|B|G|18cWW
1XPE|1|B|U|61XPE|1|B|G|19s55
1XPE|1|B|U|61XPE|1|B|G|7s35
1XPE|1|B|U|61XPE|1|B|U|60BPh


Base-PairsCount (20)Relative Frequency
cWW201.000
Base-PhosphateCount (42)Relative Frequency
0BPh421.000
Base-StackingCount (32)Relative Frequency
s53180.562
s55140.438

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)