NDB ID: 1XWU PDB ID: 1XWU 
RNA Base-Pairs, Stacking and other pairwise interactions
CSV FormatNucleotide 1 | Nucleotide 2 | Base-Pairs | Base-Stacking | Base-Phosphate |
---|
1XWU|1|A|A|11 | 1XWU|1|A|A|5 | cWW | | |
1XWU|1|A|A|11 | 1XWU|1|A|G|10 | | s53 | |
1XWU|1|A|A|11 | 1XWU|1|A|U|12 | | s35 | |
1XWU|1|A|A|16 | 1XWU|1|A|C|1 | | ns55 | |
1XWU|1|A|A|16 | 1XWU|1|A|G|15 | | s53 | |
1XWU|1|A|A|3 | 1XWU|1|A|A|3 | | | 0BPh |
1XWU|1|A|A|3 | 1XWU|1|A|A|4 | | s35 | |
1XWU|1|A|A|3 | 1XWU|1|A|C|14 | | ns55 | |
1XWU|1|A|A|3 | 1XWU|1|A|G|2 | | s53 | |
1XWU|1|A|A|3 | 1XWU|1|A|U|13 | cWW | | |
1XWU|1|A|A|4 | 1XWU|1|A|A|3 | | s53 | |
1XWU|1|A|A|4 | 1XWU|1|A|A|4 | | | 0BPh |
1XWU|1|A|A|4 | 1XWU|1|A|A|5 | | s35 | |
1XWU|1|A|A|4 | 1XWU|1|A|U|12 | cWW | | |
1XWU|1|A|A|4 | 1XWU|1|A|U|13 | | ns55 | |
1XWU|1|A|A|5 | 1XWU|1|A|A|11 | cWW | | |
1XWU|1|A|A|5 | 1XWU|1|A|A|4 | | s53 | |
1XWU|1|A|A|5 | 1XWU|1|A|A|5 | | | n0BP |
1XWU|1|A|A|5 | 1XWU|1|A|C|6 | | s35 | |
1XWU|1|A|A|5 | 1XWU|1|A|U|12 | | ns55 | |
1XWU|1|A|A|7 | 1XWU|1|A|A|7 | | | 0BPh |
1XWU|1|A|A|7 | 1XWU|1|A|A|9 | ncSW | | |
1XWU|1|A|A|7 | 1XWU|1|A|C|6 | | s53 | 7BPh |
1XWU|1|A|A|7 | 1XWU|1|A|U|8 | cSH | | |
1XWU|1|A|A|9 | 1XWU|1|A|A|7 | ncWS | | |
1XWU|1|A|A|9 | 1XWU|1|A|C|6 | | ns33 | |
1XWU|1|A|A|9 | 1XWU|1|A|G|10 | | s35 | |
1XWU|1|A|A|9 | 1XWU|1|A|U|8 | | s55 | |
1XWU|1|A|C|1 | 1XWU|1|A|A|16 | | ns55 | |
1XWU|1|A|C|1 | 1XWU|1|A|G|15 | cWW | | |
1XWU|1|A|C|1 | 1XWU|1|A|G|2 | | s35 | |
1XWU|1|A|C|14 | 1XWU|1|A|A|3 | | ns55 | |
1XWU|1|A|C|14 | 1XWU|1|A|C|14 | | | 0BPh |
1XWU|1|A|C|14 | 1XWU|1|A|G|15 | | s35 | |
1XWU|1|A|C|14 | 1XWU|1|A|G|2 | cWW | | |
1XWU|1|A|C|14 | 1XWU|1|A|U|13 | | s53 | |
1XWU|1|A|C|6 | 1XWU|1|A|A|5 | | s53 | |
1XWU|1|A|C|6 | 1XWU|1|A|A|7 | | s35 | |
1XWU|1|A|C|6 | 1XWU|1|A|A|9 | | ns33 | |
1XWU|1|A|C|6 | 1XWU|1|A|C|6 | | | 0BPh |
1XWU|1|A|C|6 | 1XWU|1|A|G|10 | cWW | | |
1XWU|1|A|G|10 | 1XWU|1|A|A|11 | | s35 | |
1XWU|1|A|G|10 | 1XWU|1|A|A|9 | | s53 | |
1XWU|1|A|G|10 | 1XWU|1|A|C|6 | cWW | | |
1XWU|1|A|G|15 | 1XWU|1|A|A|16 | | s35 | |
1XWU|1|A|G|15 | 1XWU|1|A|C|1 | cWW | | |
1XWU|1|A|G|15 | 1XWU|1|A|C|14 | | s53 | |
1XWU|1|A|G|15 | 1XWU|1|A|G|15 | | | n0BP |
1XWU|1|A|G|15 | 1XWU|1|A|G|2 | | s55 | |
1XWU|1|A|G|2 | 1XWU|1|A|A|3 | | s35 | |
1XWU|1|A|G|2 | 1XWU|1|A|C|1 | | s53 | |
1XWU|1|A|G|2 | 1XWU|1|A|C|14 | cWW | | |
1XWU|1|A|G|2 | 1XWU|1|A|G|15 | | s55 | |
1XWU|1|A|U|12 | 1XWU|1|A|A|11 | | s53 | |
1XWU|1|A|U|12 | 1XWU|1|A|A|4 | cWW | | |
1XWU|1|A|U|12 | 1XWU|1|A|A|5 | | ns55 | |
1XWU|1|A|U|12 | 1XWU|1|A|U|13 | | s35 | |
1XWU|1|A|U|13 | 1XWU|1|A|A|3 | cWW | | |
1XWU|1|A|U|13 | 1XWU|1|A|A|4 | | ns55 | |
1XWU|1|A|U|13 | 1XWU|1|A|C|14 | | s35 | |
1XWU|1|A|U|13 | 1XWU|1|A|U|12 | | s53 | |
1XWU|1|A|U|13 | 1XWU|1|A|U|13 | | | 0BPh |
1XWU|1|A|U|8 | 1XWU|1|A|A|7 | cHS | | |
1XWU|1|A|U|8 | 1XWU|1|A|A|9 | | s55 | |
1XWU|1|A|U|8 | 1XWU|1|A|U|8 | | | 0BPh |
Base-Pairs | Count (7) | Relative Frequency |
---|
cWW | 6 | 0.857 |
cHS | 1 | 0.143 |
Base-Phosphate | Count (8) | Relative Frequency |
---|
7BPh | 1 | 0.125 |
0BPh | 7 | 0.875 |
Base-Stacking | Count (7) | Relative Frequency |
---|
s53 | 5 | 0.714 |
s55 | 2 | 0.286 |