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NDB ID: 1YNG  PDB ID: 1YNG 

RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1YNG|1|A|A|101YNG|1|A|A|100BPh
1YNG|1|A|A|101YNG|1|A|C|22ns55
1YNG|1|A|A|101YNG|1|A|G|9s53
1YNG|1|A|A|101YNG|1|A|U|11s35
1YNG|1|A|A|101YNG|1|A|U|21cWW
1YNG|1|A|A|121YNG|1|A|A|120BPh
1YNG|1|A|A|121YNG|1|A|A|20s55
1YNG|1|A|A|121YNG|1|A|G|19ncWH
1YNG|1|A|A|121YNG|1|A|U|11s53
1YNG|1|A|A|121YNG|1|A|U|13s35
1YNG|1|A|A|141YNG|1|A|A|14n0BP
1YNG|1|A|A|141YNG|1|A|A|15ns35
1YNG|1|A|A|141YNG|1|A|U|13s53
1YNG|1|A|A|151YNG|1|A|A|14ns53
1YNG|1|A|A|151YNG|1|A|U|16s35
1YNG|1|A|A|201YNG|1|A|A|12s55
1YNG|1|A|A|201YNG|1|A|A|200BPh
1YNG|1|A|A|201YNG|1|A|G|19s55
1YNG|1|A|A|201YNG|1|A|U|11cWW
1YNG|1|A|A|201YNG|1|A|U|21s35
1YNG|1|A|A|231YNG|1|A|A|23n0BP
1YNG|1|A|A|231YNG|1|A|A|7
1YNG|1|A|A|231YNG|1|A|C|22s53
1YNG|1|A|A|231YNG|1|A|G|24
1YNG|1|A|A|231YNG|1|A|G|9s55
1YNG|1|A|A|231YNG|1|A|U|8cWW
1YNG|1|A|A|261YNG|1|A|A|260BPh
1YNG|1|A|A|261YNG|1|A|A|7s55
1YNG|1|A|A|261YNG|1|A|U|25s53
1YNG|1|A|A|261YNG|1|A|U|27s35
1YNG|1|A|A|261YNG|1|A|U|6cWW
1YNG|1|A|A|281YNG|1|A|A|280BPh
1YNG|1|A|A|281YNG|1|A|A|5s55
1YNG|1|A|A|281YNG|1|A|U|27s53
1YNG|1|A|A|281YNG|1|A|U|29s35
1YNG|1|A|A|281YNG|1|A|U|4cWW
1YNG|1|A|A|31YNG|1|A|A|30BPh
1YNG|1|A|A|31YNG|1|A|C|30ns55
1YNG|1|A|A|31YNG|1|A|G|2s53
1YNG|1|A|A|31YNG|1|A|U|29cWW
1YNG|1|A|A|31YNG|1|A|U|4s35
1YNG|1|A|A|51YNG|1|A|A|28s55
1YNG|1|A|A|51YNG|1|A|A|50BPh
1YNG|1|A|A|51YNG|1|A|U|27cWW
1YNG|1|A|A|51YNG|1|A|U|4s53
1YNG|1|A|A|51YNG|1|A|U|6s35
1YNG|1|A|A|71YNG|1|A|A|23
1YNG|1|A|A|71YNG|1|A|A|26s55
1YNG|1|A|A|71YNG|1|A|A|70BPh
1YNG|1|A|A|71YNG|1|A|U|6s53
1YNG|1|A|A|71YNG|1|A|U|8s35
1YNG|1|A|C|221YNG|1|A|A|10ns55
1YNG|1|A|C|221YNG|1|A|A|23s35
1YNG|1|A|C|221YNG|1|A|C|220BPh
1YNG|1|A|C|221YNG|1|A|G|9cWW
1YNG|1|A|C|221YNG|1|A|U|21s53
1YNG|1|A|C|301YNG|1|A|A|3ns55
1YNG|1|A|C|301YNG|1|A|C|300BPh
1YNG|1|A|C|301YNG|1|A|C|31s33
1YNG|1|A|C|301YNG|1|A|G|1ncWW
1YNG|1|A|C|301YNG|1|A|G|2cWW
1YNG|1|A|C|301YNG|1|A|U|29s53
1YNG|1|A|C|311YNG|1|A|C|30s33
1YNG|1|A|C|311YNG|1|A|C|310BPh
1YNG|1|A|C|311YNG|1|A|G|1ntWW
1YNG|1|A|C|311YNG|1|A|G|2ns35
1YNG|1|A|G|11YNG|1|A|C|30ncWW
1YNG|1|A|G|11YNG|1|A|C|31ntWW
1YNG|1|A|G|11YNG|1|A|G|2s35
1YNG|1|A|G|191YNG|1|A|A|12ncHW
1YNG|1|A|G|191YNG|1|A|A|20s55
1YNG|1|A|G|191YNG|1|A|G|191BPh
1YNG|1|A|G|191YNG|1|A|U|18ns33
1YNG|1|A|G|21YNG|1|A|A|3s35
1YNG|1|A|G|21YNG|1|A|C|30cWW
1YNG|1|A|G|21YNG|1|A|C|31ns53
1YNG|1|A|G|21YNG|1|A|G|1s53
1YNG|1|A|G|21YNG|1|A|G|20BPh
1YNG|1|A|G|241YNG|1|A|A|23
1YNG|1|A|G|241YNG|1|A|G|24n0BP
1YNG|1|A|G|241YNG|1|A|G|9
1YNG|1|A|G|91YNG|1|A|A|10s35
1YNG|1|A|G|91YNG|1|A|A|23s55
1YNG|1|A|G|91YNG|1|A|C|22cWW
1YNG|1|A|G|91YNG|1|A|G|24
1YNG|1|A|G|91YNG|1|A|G|9n0BP
1YNG|1|A|G|91YNG|1|A|U|8s53
1YNG|1|A|U|111YNG|1|A|A|10s53
1YNG|1|A|U|111YNG|1|A|A|12s35
1YNG|1|A|U|111YNG|1|A|A|20cWW
1YNG|1|A|U|111YNG|1|A|U|110BPh
1YNG|1|A|U|131YNG|1|A|A|12s53
1YNG|1|A|U|131YNG|1|A|A|14s35
1YNG|1|A|U|131YNG|1|A|U|130BPh
1YNG|1|A|U|161YNG|1|A|A|15s53
1YNG|1|A|U|161YNG|1|A|U|160BPh
1YNG|1|A|U|161YNG|1|A|U|17
1YNG|1|A|U|171YNG|1|A|U|16
1YNG|1|A|U|171YNG|1|A|U|18s35
1YNG|1|A|U|181YNG|1|A|G|19ns33n0BP
1YNG|1|A|U|181YNG|1|A|U|17s53
1YNG|1|A|U|181YNG|1|A|U|18n9BP
1YNG|1|A|U|211YNG|1|A|A|10cWW
1YNG|1|A|U|211YNG|1|A|A|20s53
1YNG|1|A|U|211YNG|1|A|C|22s35
1YNG|1|A|U|211YNG|1|A|U|210BPh
1YNG|1|A|U|251YNG|1|A|A|26s35
1YNG|1|A|U|251YNG|1|A|G|24
1YNG|1|A|U|251YNG|1|A|U|250BPh
1YNG|1|A|U|271YNG|1|A|A|26s53
1YNG|1|A|U|271YNG|1|A|A|28s35
1YNG|1|A|U|271YNG|1|A|A|5cWW
1YNG|1|A|U|271YNG|1|A|U|270BPh
1YNG|1|A|U|291YNG|1|A|A|28s53
1YNG|1|A|U|291YNG|1|A|A|3cWW
1YNG|1|A|U|291YNG|1|A|C|30s35
1YNG|1|A|U|291YNG|1|A|U|290BPh
1YNG|1|A|U|41YNG|1|A|A|28cWW
1YNG|1|A|U|41YNG|1|A|A|3s53
1YNG|1|A|U|41YNG|1|A|A|5s35
1YNG|1|A|U|41YNG|1|A|U|40BPh
1YNG|1|A|U|61YNG|1|A|A|26cWW
1YNG|1|A|U|61YNG|1|A|A|5s53
1YNG|1|A|U|61YNG|1|A|A|7s35
1YNG|1|A|U|61YNG|1|A|U|60BPh
1YNG|1|A|U|81YNG|1|A|A|23cWW
1YNG|1|A|U|81YNG|1|A|A|7s53
1YNG|1|A|U|81YNG|1|A|G|9s35
1YNG|1|A|U|81YNG|1|A|U|8n0BP


Base-PairsCount (9)Relative Frequency
cWW91.000
Base-PhosphateCount (22)Relative Frequency
1BPh10.045
0BPh210.955
Base-StackingCount (18)Relative Frequency
s3310.056
s53120.667
s5550.278

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)

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