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As of 18-May-2022 number of released structures: 12082
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NDB ID: DR0011  PDB ID: 1YRJ 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1YRJ|1|A|A|101YRJ|1|A|A|100BPh
1YRJ|1|A|A|101YRJ|1|A|C|11s35
1YRJ|1|A|A|101YRJ|1|A|C|9s53
1YRJ|1|A|A|101YRJ|1|B|G|39s55
1YRJ|1|A|A|101YRJ|1|B|U|38cWW
1YRJ|1|A|A|171YRJ|1|A|A|18s35
1YRJ|1|A|A|181YRJ|1|A|A|17s53
1YRJ|1|A|A|81YRJ|1|A|A|80BPh
1YRJ|1|A|A|81YRJ|1|A|C|7s53
1YRJ|1|A|A|81YRJ|1|A|C|9s35
1YRJ|1|A|A|81YRJ|1|B|G|42s55
1YRJ|1|A|C|111YRJ|1|A|A|10s53
1YRJ|1|A|C|111YRJ|1|A|C|110BPh
1YRJ|1|A|C|111YRJ|1|A|C|12s35
1YRJ|1|A|C|111YRJ|1|B|G|37cWW
1YRJ|1|A|C|121YRJ|1|A|C|11s53
1YRJ|1|A|C|121YRJ|1|A|C|12n0BP
1YRJ|1|A|C|121YRJ|1|A|G|13s35
1YRJ|1|A|C|121YRJ|1|B|G|36cWW
1YRJ|1|A|C|121YRJ|1|B|G|37s55
1YRJ|1|A|C|211YRJ|1|A|C|210BPh
1YRJ|1|A|C|211YRJ|1|A|G|22s35
1YRJ|1|A|C|211YRJ|1|A|U|20s53
1YRJ|1|A|C|211YRJ|1|B|G|28cWW
1YRJ|1|A|C|211YRJ|1|B|U|29ns55
1YRJ|1|A|C|231YRJ|1|A|C|230BPh
1YRJ|1|A|C|231YRJ|1|A|G|22s53
1YRJ|1|A|C|231YRJ|1|B|G|26cWW
1YRJ|1|A|C|41YRJ|1|A|C|40BPh
1YRJ|1|A|C|41YRJ|1|A|G|3s53
1YRJ|1|A|C|41YRJ|1|A|G|5s35
1YRJ|1|A|C|41YRJ|1|B|C|46s55
1YRJ|1|A|C|41YRJ|1|B|G|45cWW
1YRJ|1|A|C|71YRJ|1|A|A|8s35
1YRJ|1|A|C|71YRJ|1|A|C|70BPh
1YRJ|1|A|C|71YRJ|1|A|U|6s53
1YRJ|1|A|C|71YRJ|1|B|G|42cWW
1YRJ|1|A|C|91YRJ|1|A|A|10s35
1YRJ|1|A|C|91YRJ|1|A|A|8s53
1YRJ|1|A|C|91YRJ|1|A|C|90BPh
1YRJ|1|A|C|91YRJ|1|B|G|39cWW
1YRJ|1|A|G|131YRJ|1|A|C|12s53
1YRJ|1|A|G|131YRJ|1|A|G|130BPh
1YRJ|1|A|G|131YRJ|1|A|G|14s35
1YRJ|1|A|G|131YRJ|1|B|C|35cWW
1YRJ|1|A|G|131YRJ|1|B|G|36s55
1YRJ|1|A|G|141YRJ|1|A|G|13s53
1YRJ|1|A|G|141YRJ|1|A|G|140BPh
1YRJ|1|A|G|141YRJ|1|A|U|15s35
1YRJ|1|A|G|141YRJ|1|B|C|34cWW
1YRJ|1|A|G|141YRJ|1|B|C|35s55
1YRJ|1|A|G|161YRJ|1|A|G|160BPh
1YRJ|1|A|G|161YRJ|1|A|U|15s53
1YRJ|1|A|G|161YRJ|1|B|A|33s55
1YRJ|1|A|G|161YRJ|1|B|C|32cWW
1YRJ|1|A|G|191YRJ|1|A|G|19n0BP
1YRJ|1|A|G|191YRJ|1|A|U|20s35
1YRJ|1|A|G|191YRJ|1|B|A|31s55
1YRJ|1|A|G|191YRJ|1|B|C|30cWW
1YRJ|1|A|G|221YRJ|1|A|C|21s53
1YRJ|1|A|G|221YRJ|1|A|C|23s35
1YRJ|1|A|G|221YRJ|1|A|G|220BPh
1YRJ|1|A|G|221YRJ|1|B|C|27cWW
1YRJ|1|A|G|221YRJ|1|B|G|28s55
1YRJ|1|A|G|31YRJ|1|A|C|4s35
1YRJ|1|A|G|31YRJ|1|A|G|3n0BP
1YRJ|1|A|G|31YRJ|1|B|C|46cWW
1YRJ|1|A|G|51YRJ|1|A|C|4s53
1YRJ|1|A|G|51YRJ|1|A|U|6s35
1YRJ|1|A|G|51YRJ|1|B|C|44cWW
1YRJ|1|A|G|51YRJ|1|B|G|45s55
1YRJ|1|A|U|11YRJ|1|A|U|10BPh
1YRJ|1|A|U|151YRJ|1|A|G|14s53
1YRJ|1|A|U|151YRJ|1|A|G|16s35
1YRJ|1|A|U|151YRJ|1|A|U|150BPh
1YRJ|1|A|U|151YRJ|1|B|A|33cWW
1YRJ|1|A|U|21YRJ|1|A|U|20BPh
1YRJ|1|A|U|21YRJ|1|B|A|40s55
1YRJ|1|A|U|201YRJ|1|A|C|21s35
1YRJ|1|A|U|201YRJ|1|A|G|19s53
1YRJ|1|A|U|201YRJ|1|A|U|200BPh
1YRJ|1|A|U|201YRJ|1|B|U|29cWW
1YRJ|1|A|U|61YRJ|1|A|C|7s35
1YRJ|1|A|U|61YRJ|1|A|G|5s53
1YRJ|1|A|U|61YRJ|1|A|U|60BPh
1YRJ|1|A|U|61YRJ|1|B|C|44ns55
1YRJ|1|A|U|61YRJ|1|B|G|42
1YRJ|1|A|U|61YRJ|1|B|U|43cWW
1YRJ|1|B|A|311YRJ|1|A|G|19s55
1YRJ|1|B|A|311YRJ|1|B|A|31n0BP
1YRJ|1|B|A|311YRJ|1|B|C|30s53
1YRJ|1|B|A|311YRJ|1|B|C|32s35
1YRJ|1|B|A|331YRJ|1|A|G|16s55
1YRJ|1|B|A|331YRJ|1|A|U|15cWW
1YRJ|1|B|A|331YRJ|1|B|A|330BPh
1YRJ|1|B|A|331YRJ|1|B|C|32s53
1YRJ|1|B|A|331YRJ|1|B|C|34s35
1YRJ|1|B|A|401YRJ|1|A|U|2s55
1YRJ|1|B|A|401YRJ|1|B|A|400BPh
1YRJ|1|B|A|411YRJ|1|B|A|41n0BP
1YRJ|1|B|C|271YRJ|1|A|G|22cWW
1YRJ|1|B|C|271YRJ|1|B|C|270BPh
1YRJ|1|B|C|271YRJ|1|B|G|26s53
1YRJ|1|B|C|271YRJ|1|B|G|28s35
1YRJ|1|B|C|301YRJ|1|A|G|19cWW
1YRJ|1|B|C|301YRJ|1|B|A|31s35
1YRJ|1|B|C|301YRJ|1|B|C|300BPh
1YRJ|1|B|C|301YRJ|1|B|U|29s53
1YRJ|1|B|C|321YRJ|1|A|G|16cWW
1YRJ|1|B|C|321YRJ|1|B|A|31s53
1YRJ|1|B|C|321YRJ|1|B|A|33s35
1YRJ|1|B|C|321YRJ|1|B|C|320BPh
1YRJ|1|B|C|341YRJ|1|A|G|14cWW
1YRJ|1|B|C|341YRJ|1|B|A|33s53
1YRJ|1|B|C|341YRJ|1|B|C|340BPh
1YRJ|1|B|C|341YRJ|1|B|C|35s35
1YRJ|1|B|C|351YRJ|1|A|G|13cWW
1YRJ|1|B|C|351YRJ|1|A|G|14s55
1YRJ|1|B|C|351YRJ|1|B|C|34s53
1YRJ|1|B|C|351YRJ|1|B|C|350BPh
1YRJ|1|B|C|351YRJ|1|B|G|36s35
1YRJ|1|B|C|441YRJ|1|A|G|5cWW
1YRJ|1|B|C|441YRJ|1|A|U|6ns55
1YRJ|1|B|C|441YRJ|1|B|C|440BPh
1YRJ|1|B|C|441YRJ|1|B|G|45s35n0BP
1YRJ|1|B|C|441YRJ|1|B|U|43s53
1YRJ|1|B|C|461YRJ|1|A|C|4s55
1YRJ|1|B|C|461YRJ|1|A|G|3cWW
1YRJ|1|B|C|461YRJ|1|B|C|460BPh
1YRJ|1|B|C|461YRJ|1|B|G|45s53
1YRJ|1|B|G|261YRJ|1|A|C|23cWW
1YRJ|1|B|G|261YRJ|1|B|C|27s35
1YRJ|1|B|G|261YRJ|1|B|G|260BPh
1YRJ|1|B|G|281YRJ|1|A|C|21cWW
1YRJ|1|B|G|281YRJ|1|A|G|22s55
1YRJ|1|B|G|281YRJ|1|B|C|27s53
1YRJ|1|B|G|281YRJ|1|B|U|29s35
1YRJ|1|B|G|361YRJ|1|A|C|12cWW
1YRJ|1|B|G|361YRJ|1|A|G|13s55
1YRJ|1|B|G|361YRJ|1|B|C|35s53
1YRJ|1|B|G|361YRJ|1|B|G|360BPh
1YRJ|1|B|G|361YRJ|1|B|G|37s35
1YRJ|1|B|G|371YRJ|1|A|C|11cWW
1YRJ|1|B|G|371YRJ|1|A|C|12s55
1YRJ|1|B|G|371YRJ|1|B|G|36s53
1YRJ|1|B|G|371YRJ|1|B|G|37n0BP
1YRJ|1|B|G|371YRJ|1|B|U|38s35
1YRJ|1|B|G|391YRJ|1|A|A|10s55
1YRJ|1|B|G|391YRJ|1|A|C|9cWW
1YRJ|1|B|G|391YRJ|1|B|G|390BPh
1YRJ|1|B|G|391YRJ|1|B|U|38s53
1YRJ|1|B|G|421YRJ|1|A|A|8s55
1YRJ|1|B|G|421YRJ|1|A|C|7cWW
1YRJ|1|B|G|421YRJ|1|A|U|6
1YRJ|1|B|G|421YRJ|1|B|G|420BPh
1YRJ|1|B|G|421YRJ|1|B|U|43s35
1YRJ|1|B|G|451YRJ|1|A|C|4cWW
1YRJ|1|B|G|451YRJ|1|A|G|5s55
1YRJ|1|B|G|451YRJ|1|B|C|44s53
1YRJ|1|B|G|451YRJ|1|B|C|46s35
1YRJ|1|B|G|451YRJ|1|B|G|450BPh
1YRJ|1|B|U|291YRJ|1|A|C|21ns55
1YRJ|1|B|U|291YRJ|1|A|U|20cWW
1YRJ|1|B|U|291YRJ|1|B|C|30s35
1YRJ|1|B|U|291YRJ|1|B|G|28s53
1YRJ|1|B|U|291YRJ|1|B|U|29n0BP
1YRJ|1|B|U|381YRJ|1|A|A|10cWW
1YRJ|1|B|U|381YRJ|1|B|G|37s53
1YRJ|1|B|U|381YRJ|1|B|G|39s35
1YRJ|1|B|U|381YRJ|1|B|U|380BPh
1YRJ|1|B|U|431YRJ|1|A|U|6cWW
1YRJ|1|B|U|431YRJ|1|B|C|44s35
1YRJ|1|B|U|431YRJ|1|B|G|42s53
1YRJ|1|B|U|431YRJ|1|B|U|430BPh


Base-PairsCount (18)Relative Frequency
cWW181.000
Base-PhosphateCount (33)Relative Frequency
0BPh331.000
Base-StackingCount (25)Relative Frequency
s53140.560
s55110.440

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)