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NDB ID: 1Z30  PDB ID: 1Z30 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1Z30|1|A|A|111Z30|1|A|G|12s55
1Z30|1|A|A|111Z30|1|A|G|8ntSS
1Z30|1|A|A|131Z30|1|A|A|130BPh
1Z30|1|A|A|131Z30|1|A|A|14s35
1Z30|1|A|A|131Z30|1|A|G|12s53
1Z30|1|A|A|131Z30|1|A|U|6cWW
1Z30|1|A|A|141Z30|1|A|A|13s53
1Z30|1|A|A|141Z30|1|A|A|140BPh
1Z30|1|A|A|141Z30|1|A|C|15s35
1Z30|1|A|A|141Z30|1|A|U|5cWW
1Z30|1|A|A|141Z30|1|A|U|6ns55
1Z30|1|A|C|151Z30|1|A|A|14s53
1Z30|1|A|C|151Z30|1|A|C|150BPh
1Z30|1|A|C|151Z30|1|A|G|16s35
1Z30|1|A|C|151Z30|1|A|G|4cWW
1Z30|1|A|C|181Z30|1|A|C|180BPh
1Z30|1|A|C|181Z30|1|A|G|1cWW
1Z30|1|A|C|181Z30|1|A|G|2s55
1Z30|1|A|C|181Z30|1|A|U|17s53
1Z30|1|A|C|31Z30|1|A|C|30BPh
1Z30|1|A|C|31Z30|1|A|G|16cWW
1Z30|1|A|C|31Z30|1|A|G|2s53
1Z30|1|A|C|31Z30|1|A|G|4s35
1Z30|1|A|C|71Z30|1|A|C|70BPh
1Z30|1|A|C|71Z30|1|A|G|12cWW
1Z30|1|A|C|71Z30|1|A|G|8s35
1Z30|1|A|C|71Z30|1|A|U|6s53
1Z30|1|A|G|11Z30|1|A|C|18cWW
1Z30|1|A|G|11Z30|1|A|G|2s35
1Z30|1|A|G|121Z30|1|A|A|11s55
1Z30|1|A|G|121Z30|1|A|A|13s35
1Z30|1|A|G|121Z30|1|A|C|7cWW
1Z30|1|A|G|161Z30|1|A|C|15s53
1Z30|1|A|G|161Z30|1|A|C|3cWW
1Z30|1|A|G|161Z30|1|A|G|160BPh
1Z30|1|A|G|161Z30|1|A|G|4s55
1Z30|1|A|G|161Z30|1|A|U|17s35
1Z30|1|A|G|21Z30|1|A|C|18s55
1Z30|1|A|G|21Z30|1|A|C|3s35
1Z30|1|A|G|21Z30|1|A|G|1s53
1Z30|1|A|G|21Z30|1|A|G|20BPh
1Z30|1|A|G|21Z30|1|A|U|17cWW
1Z30|1|A|G|41Z30|1|A|C|15cWW
1Z30|1|A|G|41Z30|1|A|C|3s53
1Z30|1|A|G|41Z30|1|A|G|16s55
1Z30|1|A|G|41Z30|1|A|G|40BPh
1Z30|1|A|G|41Z30|1|A|U|5s35
1Z30|1|A|G|81Z30|1|A|A|11ntSS
1Z30|1|A|G|81Z30|1|A|C|7s53
1Z30|1|A|G|81Z30|1|A|G|80BPh
1Z30|1|A|G|81Z30|1|A|U|10s35
1Z30|1|A|U|101Z30|1|A|G|8s53
1Z30|1|A|U|101Z30|1|A|U|100BPh
1Z30|1|A|U|101Z30|1|A|U|99BPh
1Z30|1|A|U|171Z30|1|A|C|18s35
1Z30|1|A|U|171Z30|1|A|G|16s53
1Z30|1|A|U|171Z30|1|A|G|2cWW
1Z30|1|A|U|171Z30|1|A|U|170BPh
1Z30|1|A|U|51Z30|1|A|A|14cWW
1Z30|1|A|U|51Z30|1|A|G|4s53
1Z30|1|A|U|51Z30|1|A|U|50BPh
1Z30|1|A|U|51Z30|1|A|U|6s35
1Z30|1|A|U|61Z30|1|A|A|13cWW
1Z30|1|A|U|61Z30|1|A|A|14ns55
1Z30|1|A|U|61Z30|1|A|C|7s35
1Z30|1|A|U|61Z30|1|A|U|5s53
1Z30|1|A|U|61Z30|1|A|U|60BPh
1Z30|1|A|U|91Z30|1|A|G|8
1Z30|1|A|U|91Z30|1|A|U|90BPh


Base-PairsCount (7)Relative Frequency
cWW71.000
Base-PhosphateCount (16)Relative Frequency
9BPh10.062
0BPh150.938
Base-StackingCount (7)Relative Frequency
s5340.571
s5530.429

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)