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NDB ID: PR0153  PDB ID: 1ZBH 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
1ZBH|1|E|A|161ZBH|1|E|A|160BPh
1ZBH|1|E|A|161ZBH|1|E|G|17s35
1ZBH|1|E|A|161ZBH|1|E|U|11cWW
1ZBH|1|E|A|161ZBH|1|E|U|14s55
1ZBH|1|E|A|181ZBH|1|E|A|180BPh
1ZBH|1|E|A|181ZBH|1|E|G|17s53
1ZBH|1|E|A|181ZBH|1|E|G|19s35
1ZBH|1|E|A|181ZBH|1|E|U|9cWW
1ZBH|1|E|C|101ZBH|1|E|C|100BPh
1ZBH|1|E|C|101ZBH|1|E|G|17cWW
1ZBH|1|E|C|101ZBH|1|E|U|11s35
1ZBH|1|E|C|101ZBH|1|E|U|9s53
1ZBH|1|E|C|151ZBH|1|E|C|150BPh
1ZBH|1|E|C|201ZBH|1|E|C|200BPh
1ZBH|1|E|C|201ZBH|1|E|C|21s35
1ZBH|1|E|C|201ZBH|1|E|G|19s53
1ZBH|1|E|C|201ZBH|1|E|G|7cWW
1ZBH|1|E|C|211ZBH|1|E|C|20s53
1ZBH|1|E|C|211ZBH|1|E|C|210BPh
1ZBH|1|E|C|211ZBH|1|E|G|6ncWW
1ZBH|1|E|C|211ZBH|1|E|G|7s55
1ZBH|1|E|C|81ZBH|1|E|C|80BPh
1ZBH|1|E|C|81ZBH|1|E|G|19cWW
1ZBH|1|E|C|81ZBH|1|E|G|7s53
1ZBH|1|E|C|81ZBH|1|E|U|9s35
1ZBH|1|E|G|171ZBH|1|E|A|16s53
1ZBH|1|E|G|171ZBH|1|E|A|18s35
1ZBH|1|E|G|171ZBH|1|E|C|10cWW
1ZBH|1|E|G|171ZBH|1|E|G|170BPh
1ZBH|1|E|G|171ZBH|1|E|U|11s55
1ZBH|1|E|G|191ZBH|1|E|A|18s53
1ZBH|1|E|G|191ZBH|1|E|C|20s35
1ZBH|1|E|G|191ZBH|1|E|C|8cWW
1ZBH|1|E|G|191ZBH|1|E|U|9s55
1ZBH|1|E|G|61ZBH|1|E|C|21ncWW
1ZBH|1|E|G|61ZBH|1|E|G|7s35
1ZBH|1|E|G|71ZBH|1|E|C|20cWW
1ZBH|1|E|G|71ZBH|1|E|C|21s55
1ZBH|1|E|G|71ZBH|1|E|C|8s35
1ZBH|1|E|G|71ZBH|1|E|G|6s53
1ZBH|1|E|G|71ZBH|1|E|G|70BPh
1ZBH|1|E|U|111ZBH|1|E|A|16cWW
1ZBH|1|E|U|111ZBH|1|E|C|10s53
1ZBH|1|E|U|111ZBH|1|E|G|17s55
1ZBH|1|E|U|111ZBH|1|E|U|110BPh
1ZBH|1|E|U|111ZBH|1|E|U|14s35
1ZBH|1|E|U|131ZBH|1|E|U|13n0BP
1ZBH|1|E|U|141ZBH|1|E|A|16s55
1ZBH|1|E|U|141ZBH|1|E|U|11s53
1ZBH|1|E|U|141ZBH|1|E|U|12
1ZBH|1|E|U|141ZBH|1|E|U|139BPh
1ZBH|1|E|U|141ZBH|1|E|U|140BPh
1ZBH|1|E|U|91ZBH|1|E|A|18cWW
1ZBH|1|E|U|91ZBH|1|E|C|10s35
1ZBH|1|E|U|91ZBH|1|E|C|8s53
1ZBH|1|E|U|91ZBH|1|E|G|19s55
1ZBH|1|E|U|91ZBH|1|E|U|9n0BP
1ZBH|1|F|A|161ZBH|1|F|A|160BPh
1ZBH|1|F|A|161ZBH|1|F|G|17s35
1ZBH|1|F|A|161ZBH|1|F|U|11cWW
1ZBH|1|F|A|161ZBH|1|F|U|14s55
1ZBH|1|F|A|181ZBH|1|F|A|180BPh
1ZBH|1|F|A|181ZBH|1|F|C|10ns55
1ZBH|1|F|A|181ZBH|1|F|G|17s53
1ZBH|1|F|A|181ZBH|1|F|G|19s35
1ZBH|1|F|A|181ZBH|1|F|U|9cWW
1ZBH|1|F|C|101ZBH|1|F|A|18ns55
1ZBH|1|F|C|101ZBH|1|F|C|100BPh
1ZBH|1|F|C|101ZBH|1|F|G|17cWW
1ZBH|1|F|C|101ZBH|1|F|U|11s35
1ZBH|1|F|C|101ZBH|1|F|U|9s53
1ZBH|1|F|C|151ZBH|1|F|C|150BPh
1ZBH|1|F|C|201ZBH|1|F|C|200BPh
1ZBH|1|F|C|201ZBH|1|F|C|21s35
1ZBH|1|F|C|201ZBH|1|F|G|19s53
1ZBH|1|F|C|201ZBH|1|F|G|7cWW
1ZBH|1|F|C|211ZBH|1|F|C|20s53
1ZBH|1|F|C|211ZBH|1|F|C|210BPh
1ZBH|1|F|C|211ZBH|1|F|G|6cWW
1ZBH|1|F|C|211ZBH|1|F|G|7s55
1ZBH|1|F|C|81ZBH|1|F|C|80BPh
1ZBH|1|F|C|81ZBH|1|F|G|19cWW
1ZBH|1|F|C|81ZBH|1|F|G|7s53
1ZBH|1|F|C|81ZBH|1|F|U|9s35
1ZBH|1|F|G|171ZBH|1|F|A|16s53
1ZBH|1|F|G|171ZBH|1|F|A|18s35
1ZBH|1|F|G|171ZBH|1|F|C|10cWW
1ZBH|1|F|G|171ZBH|1|F|G|170BPh
1ZBH|1|F|G|171ZBH|1|F|U|11s55
1ZBH|1|F|G|191ZBH|1|F|A|18s53
1ZBH|1|F|G|191ZBH|1|F|C|20s35
1ZBH|1|F|G|191ZBH|1|F|C|8cWW
1ZBH|1|F|G|191ZBH|1|F|G|19n0BP
1ZBH|1|F|G|191ZBH|1|F|U|9s55
1ZBH|1|F|G|61ZBH|1|F|C|21cWW
1ZBH|1|F|G|61ZBH|1|F|G|7s35
1ZBH|1|F|G|71ZBH|1|F|C|20cWW
1ZBH|1|F|G|71ZBH|1|F|C|21s55
1ZBH|1|F|G|71ZBH|1|F|C|8s35
1ZBH|1|F|G|71ZBH|1|F|G|6s53
1ZBH|1|F|G|71ZBH|1|F|G|7n0BP
1ZBH|1|F|U|111ZBH|1|F|A|16cWW
1ZBH|1|F|U|111ZBH|1|F|C|10s53
1ZBH|1|F|U|111ZBH|1|F|G|17s55
1ZBH|1|F|U|111ZBH|1|F|U|110BPh
1ZBH|1|F|U|111ZBH|1|F|U|14s35
1ZBH|1|F|U|141ZBH|1|F|A|16s55
1ZBH|1|F|U|141ZBH|1|F|U|11s53
1ZBH|1|F|U|141ZBH|1|F|U|12
1ZBH|1|F|U|141ZBH|1|F|U|139BPh
1ZBH|1|F|U|141ZBH|1|F|U|140BPh
1ZBH|1|F|U|91ZBH|1|F|A|18cWW
1ZBH|1|F|U|91ZBH|1|F|C|10s35
1ZBH|1|F|U|91ZBH|1|F|C|8s53
1ZBH|1|F|U|91ZBH|1|F|G|19s55
1ZBH|1|F|U|91ZBH|1|F|U|9n0BP


Base-PairsCount (11)Relative Frequency
cWW111.000
Base-PhosphateCount (23)Relative Frequency
9BPh20.087
0BPh210.913
Base-StackingCount (16)Relative Frequency
s5380.500
s5580.500

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)