A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: 219D  PDB ID: 219D 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14A_DA4:U17_B0.185-0.1580.3999.53-11.483-2.865
16A_DA6:U15_B0.209-0.117-0.5524.214-16.615-5.491
17A_DA7:U14_B0.303-0.0850.0270.726-25.069-6.868
12A_DC2:G19_B0.349-0.1690.212-4.601-7.025-2.376
11A_DG1:C20_B-0.001-0.1180.068-3.689-15.806-1.221
19A_DG9:C12_B-0.099-0.1540.388-2.083-18.964-4.127
110A_DG10:C11_B-0.317-0.2510.205-10.69-30.466-3.993
13A_DT3:A18_B-0.399-0.0440.2863.262-4.037-2.052
15A_DT5:A16_B-0.327-0.089-0.03911.807-21.481-3.505
18A_PST8:A13_B-0.218-0.035-0.12811.397-21.863-6.744

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.