219D: Base Pair Morphology Step Parameters

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NDB ID: 219D PDB ID: 219D

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	4	AA_DA4DT5:A16U17_BB	0.201	-1.332	3.168	2.59	-0.159	34.296	-2.228	0.053	3.18	-0.269	-4.384	34.391
1	6	AA_DA6DA7:U14U15_BB	0.085	-0.88	3.076	-6.461	6.848	33.899	-2.392	-1.023	2.788	11.473	10.824	35.145
1	7	AA_DA7PST8:A13U14_BB	-0.549	-0.202	2.897	1.007	-1.669	35.014	-0.114	1.044	2.887	-2.772	-1.671	35.066
1	2	AA_DC2DT3:A18G19_BB	-0.451	-1.438	2.876	-2.438	0.919	24.945	-3.549	0.405	2.852	2.119	5.625	25.079
1	1	AA_DG1DC2:G19C20_BB	-0.564	-1.525	3.123	-2.734	5.826	37.079	-3.066	0.546	2.892	9.077	4.26	37.614
1	9	AA_DG9DG10:C11C12_BB	0.109	-1.029	3.404	1.788	6.867	31.272	-3.112	0.128	3.114	12.537	-3.265	32.048
1	3	AA_DT3DA4:U17A18_BB	-0.024	-1.565	2.719	-1.537	7.879	37.829	-3.126	-0.112	2.357	11.987	2.339	38.641
1	5	AA_DT5DA6:U15A16_BB	-0.136	-1.155	3.491	8.572	25.31	31.846	-4.243	1.076	1.996	38.725	-13.115	41.348
1	8	AA_PST8DG9:C12A13_BB	0.092	-1.223	3.36	-3.007	12.624	33.13	-3.782	-0.575	2.711	21.156	5.039	35.515

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.