A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: ARL037  PDB ID: 255D 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13A_A3:U10_A-0.15-0.095-0.148-5.907-5.1063.685
14A_C4:G9_A0.118-0.064-0.093.547-6.6220.987
17A_C7:U6_A0.5470.0410.1499.5088.336-37.641
111A_C11:G2_A0.207-0.258-0.1491.755-12.5432.507
112A_C12:G1_A0.298-0.12-0.153-0.040.6631.779
11A_G1:C12_A-0.298-0.12-0.1530.040.6631.779
12A_G2:C11_A-0.207-0.258-0.149-1.755-12.5432.507
18A_G8:U5_A-2.36-0.590.0727.871-12.8540.904
19A_G9:C4_A-0.118-0.064-0.09-3.547-6.6220.987
15A_U5:G8_A2.36-0.590.072-7.871-12.8540.904
16A_U6:C7_A-0.5470.0410.149-9.5088.336-37.641
110A_U10:A3_A0.15-0.095-0.1485.907-5.1063.685

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.