A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 25-May-2022 number of released structures: 12098
Search for released structures

NDB ID: ARL037  PDB ID: 255D 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
13AA_A3C4:G9U10_AA0.791-2.3313.0832.4894.0824.118-6.601-1.1722.7249.644-5.88324.58
14AA_C4U5:G8G9_AA0.5-1.9173.5492.7715.89545.487-2.994-0.3883.3137.578-3.56245.926
17AA_C7G8:U5U6_AA3.29-2.2433.405-2.5118.82318.937-9.237-9.8961.74825.0047.11721.024
111AA_C11C12:G1G2_AA0.697-2.0013.3662.3059.03432.553-4.834-0.8412.76915.718-4.01133.827
11AA_G1G2:C11C12_AA-0.697-2.0013.366-2.3059.03432.553-4.8340.8412.76915.7184.01133.827
12AA_G2A3:U10C11_AA-0.152-1.6183.416-1.5276.96631.795-4.0930.0063.00712.5192.74432.565
18AA_G8G9:C4U5_AA-0.5-1.9173.549-2.7715.89545.487-2.9940.3883.3137.5783.56245.926
19AA_G9U10:A3C4_AA-0.791-2.3313.083-2.4894.0824.118-6.6011.1722.7249.6445.88324.58
15AA_U5U6:C7G8_AA-3.29-2.2433.4052.5118.82318.937-9.2379.8961.74825.004-7.11721.024
16AA_U6C7:U6C7_AA0.0-1.6753.2050.06.09333.479-3.7730.02.86510.4690.034.013
110AA_U10C11:G2A3_AA0.152-1.6183.4161.5276.96631.795-4.093-0.0063.00712.519-2.74432.565

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.