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NDB ID: ARL037  PDB ID: 255D 

RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
255D|1|A|A|3255D|1|A|A|30BPh
255D|1|A|A|3255D|1|A|C|11||||2_656ns55
255D|1|A|A|3255D|1|A|C|4s35
255D|1|A|A|3255D|1|A|G|2s53
255D|1|A|A|3255D|1|A|U|10||||2_656cWW
255D|1|A|A|3||||2_656255D|1|A|A|3||||2_6560BPh
255D|1|A|A|3||||2_656255D|1|A|C|11ns55
255D|1|A|A|3||||2_656255D|1|A|C|4||||2_656s35
255D|1|A|A|3||||2_656255D|1|A|G|2||||2_656s53
255D|1|A|A|3||||2_656255D|1|A|U|10cWW
255D|1|A|C|11255D|1|A|A|3||||2_656ns55
255D|1|A|C|11255D|1|A|C|110BPh
255D|1|A|C|11255D|1|A|C|12s35
255D|1|A|C|11255D|1|A|G|2||||2_656cWW
255D|1|A|C|11255D|1|A|U|10s53
255D|1|A|C|11||||2_656255D|1|A|A|3ns55
255D|1|A|C|11||||2_656255D|1|A|C|11||||2_6560BPh
255D|1|A|C|11||||2_656255D|1|A|C|12||||2_656s35
255D|1|A|C|11||||2_656255D|1|A|G|2cWW
255D|1|A|C|11||||2_656255D|1|A|U|10||||2_656s53
255D|1|A|C|12255D|1|A|C|11s53
255D|1|A|C|12255D|1|A|C|120BPh
255D|1|A|C|12255D|1|A|G|1||||2_656cWW
255D|1|A|C|12255D|1|A|G|2||||2_656s55
255D|1|A|C|12||||2_656255D|1|A|C|11||||2_656s53
255D|1|A|C|12||||2_656255D|1|A|C|12||||2_6560BPh
255D|1|A|C|12||||2_656255D|1|A|G|1cWW
255D|1|A|C|12||||2_656255D|1|A|G|2s55
255D|1|A|C|4255D|1|A|A|3s53
255D|1|A|C|4255D|1|A|C|4n0BP
255D|1|A|C|4255D|1|A|G|9||||2_656cWW
255D|1|A|C|4255D|1|A|U|5s35
255D|1|A|C|4||||2_656255D|1|A|A|3||||2_656s53
255D|1|A|C|4||||2_656255D|1|A|C|4||||2_656n0BP
255D|1|A|C|4||||2_656255D|1|A|G|9cWW
255D|1|A|C|4||||2_656255D|1|A|U|5||||2_656s35
255D|1|A|C|7255D|1|A|C|70BPh
255D|1|A|C|7255D|1|A|G|8s35
255D|1|A|C|7255D|1|A|U|6s53
255D|1|A|C|7255D|1|A|U|6||||2_656cWW
255D|1|A|C|7||||2_656255D|1|A|C|7||||2_6560BPh
255D|1|A|C|7||||2_656255D|1|A|G|8||||2_656s35
255D|1|A|C|7||||2_656255D|1|A|U|6cWW
255D|1|A|C|7||||2_656255D|1|A|U|6||||2_656s53
255D|1|A|G|1255D|1|A|C|12||||2_656cWW
255D|1|A|G|1255D|1|A|G|1n0BP
255D|1|A|G|1255D|1|A|G|2s35
255D|1|A|G|1||||2_656255D|1|A|C|12cWW
255D|1|A|G|1||||2_656255D|1|A|G|1||||2_656n0BP
255D|1|A|G|1||||2_656255D|1|A|G|2||||2_656s35
255D|1|A|G|2255D|1|A|A|3s35
255D|1|A|G|2255D|1|A|C|11||||2_656cWW
255D|1|A|G|2255D|1|A|C|12||||2_656s55
255D|1|A|G|2255D|1|A|G|1s53
255D|1|A|G|2255D|1|A|G|20BPh
255D|1|A|G|2||||2_656255D|1|A|A|3||||2_656s35
255D|1|A|G|2||||2_656255D|1|A|C|11cWW
255D|1|A|G|2||||2_656255D|1|A|C|12s55
255D|1|A|G|2||||2_656255D|1|A|G|1||||2_656s53
255D|1|A|G|2||||2_656255D|1|A|G|2||||2_6560BPh
255D|1|A|G|8255D|1|A|C|7s53
255D|1|A|G|8255D|1|A|G|80BPh
255D|1|A|G|8255D|1|A|G|9s35
255D|1|A|G|8255D|1|A|U|5||||2_656cWW
255D|1|A|G|8255D|1|A|U|6||||2_656s55
255D|1|A|G|8||||2_656255D|1|A|C|7||||2_656s53
255D|1|A|G|8||||2_656255D|1|A|G|8||||2_6560BPh
255D|1|A|G|8||||2_656255D|1|A|G|9||||2_656s35
255D|1|A|G|8||||2_656255D|1|A|U|5cWW
255D|1|A|G|8||||2_656255D|1|A|U|6s55
255D|1|A|G|9255D|1|A|C|4||||2_656cWW
255D|1|A|G|9255D|1|A|G|8s53
255D|1|A|G|9255D|1|A|G|90BPh
255D|1|A|G|9255D|1|A|U|10s35
255D|1|A|G|9255D|1|A|U|5||||2_656s55
255D|1|A|G|9||||2_656255D|1|A|C|4cWW
255D|1|A|G|9||||2_656255D|1|A|G|8||||2_656s53
255D|1|A|G|9||||2_656255D|1|A|G|9||||2_6560BPh
255D|1|A|G|9||||2_656255D|1|A|U|10||||2_656s35
255D|1|A|G|9||||2_656255D|1|A|U|5s55
255D|1|A|U|10255D|1|A|A|3||||2_656cWW
255D|1|A|U|10255D|1|A|C|11s35
255D|1|A|U|10255D|1|A|G|9s53
255D|1|A|U|10255D|1|A|U|100BPh
255D|1|A|U|10||||2_656255D|1|A|A|3cWW
255D|1|A|U|10||||2_656255D|1|A|C|11||||2_656s35
255D|1|A|U|10||||2_656255D|1|A|G|9||||2_656s53
255D|1|A|U|10||||2_656255D|1|A|U|10||||2_6560BPh
255D|1|A|U|5255D|1|A|C|4s53
255D|1|A|U|5255D|1|A|G|8||||2_656cWW
255D|1|A|U|5255D|1|A|G|9||||2_656s55
255D|1|A|U|5255D|1|A|U|50BPh
255D|1|A|U|5||||2_656255D|1|A|C|4||||2_656s53
255D|1|A|U|5||||2_656255D|1|A|G|8cWW
255D|1|A|U|5||||2_656255D|1|A|G|9s55
255D|1|A|U|5||||2_656255D|1|A|U|5||||2_6560BPh
255D|1|A|U|6255D|1|A|C|7s35
255D|1|A|U|6255D|1|A|C|7||||2_656cWW
255D|1|A|U|6255D|1|A|G|8||||2_656s55
255D|1|A|U|6255D|1|A|U|5
255D|1|A|U|6255D|1|A|U|60BPh
255D|1|A|U|6||||2_656255D|1|A|C|7cWW
255D|1|A|U|6||||2_656255D|1|A|C|7||||2_656s35
255D|1|A|U|6||||2_656255D|1|A|G|8s55
255D|1|A|U|6||||2_656255D|1|A|U|5||||2_656
255D|1|A|U|6||||2_656255D|1|A|U|6||||2_6560BPh


Base-PairsCount (12)Relative Frequency
cWW121.000
Base-PhosphateCount (20)Relative Frequency
0BPh201.000
Base-StackingCount (12)Relative Frequency
s5360.500
s5560.500

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)

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