A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 1-Apr-2020 number of released structures: 10687
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NDB ID: 28SP  PDB ID: 28SP 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13A_C3:G26_A0.132-0.205-0.285-1.7343.993-3.06
19A_C11:G18_A0.435-0.247-0.1523.47-14.818-0.405
110A_C12:G17_A0.593-0.288-0.0170.6618.304-1.324
11A_G1:C28_A-0.5-0.270.5516.93-3.57-1.16
12A_G2:C27_A-0.402-0.206-0.17120.516-6.871-0.978
14A_G4:C25_A-0.45-0.199-0.0212.0379.534-0.833
16A_G8:G21_A-7.136-3.8810.62913.619-12.097-4.164
17A_G9:A20_A-0.2631.432-0.56112.002-10.546-12.6
111A_G13:A16_A7.169-5.690.78717.8684.203-33.686
15A_U5:G24_A2.302-0.675-1.0429.313-4.3626.257
18A_U10:A19_A-0.5370.089-0.47520.779-17.854-9.131

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.