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NDB ID: 28SP  PDB ID: 28SP 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
28SP|1|A|A|1528SP|1|A|A|150BPh
28SP|1|A|A|1528SP|1|A|A|16s35
28SP|1|A|A|1528SP|1|A|G|13s33
28SP|1|A|A|1528SP|1|A|G|14s53
28SP|1|A|A|1628SP|1|A|A|15s53
28SP|1|A|A|1628SP|1|A|A|160BPh
28SP|1|A|A|1628SP|1|A|G|13ntHS
28SP|1|A|A|1628SP|1|A|G|17s35
28SP|1|A|A|1928SP|1|A|A|190BPh
28SP|1|A|A|1928SP|1|A|A|20s35
28SP|1|A|A|1928SP|1|A|G|18s53
28SP|1|A|A|1928SP|1|A|U|10cWW
28SP|1|A|A|2028SP|1|A|A|19s53
28SP|1|A|A|2028SP|1|A|A|200BPh
28SP|1|A|A|2028SP|1|A|G|21s35
28SP|1|A|A|2028SP|1|A|G|9cWW
28SP|1|A|A|2328SP|1|A|A|7s55
28SP|1|A|A|2328SP|1|A|C|22
28SP|1|A|A|2328SP|1|A|C|6
28SP|1|A|A|2328SP|1|A|G|24s35
28SP|1|A|A|728SP|1|A|A|23s55
28SP|1|A|A|728SP|1|A|A|7n0BP
28SP|1|A|A|728SP|1|A|C|6
28SP|1|A|A|728SP|1|A|G|8s35
28SP|1|A|C|1128SP|1|A|C|110BPh
28SP|1|A|C|1128SP|1|A|C|12s35
28SP|1|A|C|1128SP|1|A|G|18cWW
28SP|1|A|C|1128SP|1|A|U|10s53
28SP|1|A|C|1228SP|1|A|C|11s53
28SP|1|A|C|1228SP|1|A|C|120BPh
28SP|1|A|C|1228SP|1|A|G|13s35
28SP|1|A|C|1228SP|1|A|G|17cWW
28SP|1|A|C|1228SP|1|A|G|18s55
28SP|1|A|C|2228SP|1|A|C|6ns55
28SP|1|A|C|2228SP|1|A|G|21s539BPh
28SP|1|A|C|2528SP|1|A|C|250BPh
28SP|1|A|C|2528SP|1|A|G|24s53
28SP|1|A|C|2528SP|1|A|G|26ns35
28SP|1|A|C|2528SP|1|A|G|4cWW
28SP|1|A|C|2728SP|1|A|C|270BPh
28SP|1|A|C|2728SP|1|A|C|28ns33
28SP|1|A|C|2728SP|1|A|G|2cWW
28SP|1|A|C|2728SP|1|A|G|26s53
28SP|1|A|C|2828SP|1|A|C|27ns33
28SP|1|A|C|2828SP|1|A|C|280BPh
28SP|1|A|C|2828SP|1|A|G|1cWW
28SP|1|A|C|328SP|1|A|C|30BPh
28SP|1|A|C|328SP|1|A|G|2s53
28SP|1|A|C|328SP|1|A|G|26cWW
28SP|1|A|C|328SP|1|A|G|4s35
28SP|1|A|C|628SP|1|A|C|22ns55
28SP|1|A|C|628SP|1|A|C|6n0BP
28SP|1|A|C|628SP|1|A|G|21s33
28SP|1|A|C|628SP|1|A|U|5s53n9BP
28SP|1|A|G|128SP|1|A|C|28cWW
28SP|1|A|G|128SP|1|A|G|2s55
28SP|1|A|G|1328SP|1|A|A|15s33
28SP|1|A|G|1328SP|1|A|A|16ntSH3BPh
28SP|1|A|G|1328SP|1|A|C|12s53
28SP|1|A|G|1328SP|1|A|G|130BPh
28SP|1|A|G|1328SP|1|A|G|17s55
28SP|1|A|G|1428SP|1|A|A|15s35
28SP|1|A|G|1428SP|1|A|G|13
28SP|1|A|G|1728SP|1|A|A|16s53
28SP|1|A|G|1728SP|1|A|C|12cWW
28SP|1|A|G|1728SP|1|A|G|13s55
28SP|1|A|G|1728SP|1|A|G|17n0BP
28SP|1|A|G|1728SP|1|A|G|18s35
28SP|1|A|G|1828SP|1|A|A|19s35
28SP|1|A|G|1828SP|1|A|C|11cWW
28SP|1|A|G|1828SP|1|A|C|12s55
28SP|1|A|G|1828SP|1|A|G|17s53
28SP|1|A|G|1828SP|1|A|G|180BPh
28SP|1|A|G|228SP|1|A|C|27cWW
28SP|1|A|G|228SP|1|A|C|3s35
28SP|1|A|G|228SP|1|A|G|1s55
28SP|1|A|G|2128SP|1|A|A|20s53
28SP|1|A|G|2128SP|1|A|A|74BPh
28SP|1|A|G|2128SP|1|A|C|22s35
28SP|1|A|G|2128SP|1|A|C|6s33
28SP|1|A|G|2128SP|1|A|G|8tSH
28SP|1|A|G|2128SP|1|A|G|9ns55
28SP|1|A|G|2428SP|1|A|A|23s53
28SP|1|A|G|2428SP|1|A|C|25s35
28SP|1|A|G|2428SP|1|A|G|240BPh
28SP|1|A|G|2428SP|1|A|U|5cWW
28SP|1|A|G|2628SP|1|A|C|25ns53
28SP|1|A|G|2628SP|1|A|C|27s35
28SP|1|A|G|2628SP|1|A|C|3cWW
28SP|1|A|G|2628SP|1|A|G|260BPh
28SP|1|A|G|2628SP|1|A|G|4s55
28SP|1|A|G|428SP|1|A|C|25cWW
28SP|1|A|G|428SP|1|A|C|3s53
28SP|1|A|G|428SP|1|A|G|26s55
28SP|1|A|G|428SP|1|A|G|40BPh
28SP|1|A|G|428SP|1|A|U|5s35
28SP|1|A|G|828SP|1|A|A|7s53
28SP|1|A|G|828SP|1|A|C|224BPh
28SP|1|A|G|828SP|1|A|G|21tHS
28SP|1|A|G|828SP|1|A|G|80BPh
28SP|1|A|G|828SP|1|A|G|9s35
28SP|1|A|G|928SP|1|A|A|20cWW
28SP|1|A|G|928SP|1|A|G|21ns55
28SP|1|A|G|928SP|1|A|G|8s53
28SP|1|A|G|928SP|1|A|U|10s35
28SP|1|A|U|1028SP|1|A|A|19cWW
28SP|1|A|U|1028SP|1|A|C|11s35
28SP|1|A|U|1028SP|1|A|G|9s53
28SP|1|A|U|1028SP|1|A|U|100BPh
28SP|1|A|U|528SP|1|A|C|6s35
28SP|1|A|U|528SP|1|A|G|24cWW
28SP|1|A|U|528SP|1|A|G|4s53
28SP|1|A|U|528SP|1|A|U|50BPh


Base-PairsCount (10)Relative Frequency
cWW90.900
tHS10.100
Base-PhosphateCount (22)Relative Frequency
3BPh10.045
4BPh20.091
9BPh10.045
0BPh180.818
Base-StackingCount (15)Relative Frequency
s3320.133
s5380.533
s5550.333

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)