2A64: Base Pair Morphology Parameters

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NDB ID: UR0065 PDB ID: 2A64

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	3	A_A4:U411_A	-0.047	-0.048	0.549	17.659	8.062	-2.709
1	4	A_A5:U410_A	0.013	-0.092	0.198	12.956	-6.014	3.664
1	7	A_A8:U407_A	0.295	-0.205	0.853	-0.314	-30.659	-19.908
1	39	A_A48:U398_A	-3.854	-1.951	-1.526	11.677	-33.194	-92.821
1	40	A_A50:U397_A	0.079	-0.031	0.112	-4.84	-17.364	-11.394
1	44	A_A55:U393_A	-0.102	-0.023	0.156	-13.081	-0.719	7.609
1	52	A_A63:U81_A	0.063	-0.478	1.838	20.18	-4.023	-0.073
1	61	A_A72:U293_A	-1.783	-5.338	-0.918	-43.061	33.18	-170.839
1	76	A_A111:U94_A	0.04	-0.063	-0.398	9.201	-11.465	1.453
1	81	A_A116:U135_A	0.075	-0.296	0.863	-16.939	-4.023	6.35
1	89	A_A257:G275_A	-6.438	-3.535	1.067	12.783	-42.11	-21.164
1	93	A_A262:A271_A	6.547	-4.015	2.159	-25.649	18.098	2.274
1	109	A_A287:G298_A	-6.611	-3.899	-0.614	-8.479	-3.441	-10.954
1	59	A_A295:A291_A	3.863	1.606	0.395	-1.747	1.524	-103.065
1	94	A_A300:G285_A	-7.378	-4.621	0.812	-14.923	-6.177	-6.872
1	98	A_A304:U281_A	-0.025	-0.22	0.238	1.486	-4.559	0.971
1	99	A_A305:U280_A	0.003	-0.234	0.438	7.609	7.457	7.16
1	102	A_A308:U329_A	-0.201	-0.295	0.126	-9.543	3.947	7.524
1	104	A_A310:U327_A	-0.003	-0.199	0.202	1.045	-9.984	-1.973
1	113	A_A330:A336_A	6.661	-2.239	0.697	-24.584	-10.165	37.994
1	18	A_A339:U20_A	-0.025	-0.11	-0.444	3.104	2.542	-2.482
1	21	A_A342:U17_A	0.15	-0.094	-0.643	4.276	1.417	-3.971
1	116	A_A353:U376_A	0.116	-0.299	0.924	-21.446	29.456	9.199
1	14	A_A385:G47_A	0.044	4.634	0.914	-9.85	6.947	-105.469
1	16	A_A387:A49_A	4.207	-3.028	-0.961	18.19	-38.486	-58.253
1	112	A_A389:U337_A	-4.135	-2.702	-0.949	0.459	-32.338	-91.713
1	6	A_C7:G408_A	-0.104	-0.275	1.045	-8.391	-19.034	-7.995
1	10	A_C11:G404_A	0.198	-0.116	-0.46	5.085	-19.21	3.99
1	12	A_C13:G402_A	0.012	-0.186	-0.838	2.948	6.653	-3.66
1	29	A_C23:G44_A	-0.089	-0.022	-0.587	16.229	7.453	-2.213
1	32	A_C26:G41_A	0.152	0.058	0.429	-7.071	-4.094	-1.365
1	35	A_C29:G38_A	0.135	-0.053	0.232	-23.342	-4.488	-1.672
1	36	A_C30:G37_A	0.046	-0.166	0.53	-11.222	-7.303	-4.596
1	42	A_C53:G395_A	0.224	-0.103	-0.197	5.618	2.605	-0.694
1	43	A_C54:G394_A	0.009	-0.069	-0.025	1.994	10.465	0.956
1	47	A_C58:G254_A	-0.071	-0.306	-1.139	-0.774	-8.878	-1.12
1	49	A_C60:G252_A	0.192	-0.179	-0.905	14.577	-10.791	-3.354
1	51	A_C62:G250_A	0.064	-0.277	0.311	18.354	-16.802	-8.099
1	53	A_C64:G80_A	0.038	-0.094	-0.397	6.115	4.292	-3.489
1	57	A_C69:G76_A	0.126	-0.14	0.592	-14.686	-1.891	-3.398
1	63	A_C88:G248_A	0.233	-0.249	1.091	-7.964	16.348	8.411
1	74	A_C109:G96_A	0.304	-0.092	-0.706	-0.177	4.458	1.741
1	80	A_C115:G136_A	0.249	0.02	-0.275	30.086	-27.742	0.086
1	83	A_C118:G133_A	0.08	-0.146	0.988	-14.549	0.42	-1.598
1	84	A_C119:G132_A	-0.012	-0.063	0.722	-16.243	-11.3	-3.249
1	71	A_C193:G237_A	0.034	-0.554	1.445	23.791	-0.464	2.905
1	72	A_C194:G236_A	0.018	-0.103	0.293	26.257	-5.775	-3.558
1	90	A_C258:G274_A	-0.046	-0.179	0.748	15.322	-7.541	-0.031
1	91	A_C259:G273_A	0.041	-0.306	0.042	9.099	-6.698	-1.731
1	92	A_C260:G272_A	0.162	-0.22	0.378	-5.519	-2.929	-2.157
1	103	A_C309:G328_A	0.184	-0.374	0.743	3.686	-17.945	-7.963
1	107	A_C313:G324_A	0.219	-0.096	0.169	-13.973	-9.576	1.108
1	22	A_C343:G16_A	0.057	-0.09	-0.858	21.319	9.312	-2.16
1	23	A_C344:G15_A	-0.024	-0.467	-1.79	20.167	-0.562	-3.449
1	25	A_C346:G383_A	0.122	-0.105	-0.789	16.792	-11.242	-0.436
1	26	A_C347:G382_A	0.147	-0.1	-0.222	-8.725	8.05	-0.365
1	117	A_C354:G375_A	0.112	-0.426	1.87	-24.912	8.354	0.24
1	15	A_C386:G46_A	0.111	-0.326	0.839	12.461	-16.135	-7.36
1	9	A_G10:C405_A	0.005	-0.14	0.691	9.89	-14.972	-4.155
1	13	A_G14:U400_A	-2.863	0.859	1.132	8.845	-28.749	38.745
1	31	A_G25:U42_A	-2.457	-0.441	-0.704	-5.351	-7.816	-2.693
1	33	A_G27:C40_A	-0.127	-0.111	-0.671	-2.224	13.942	-1.951
1	34	A_G28:C39_A	-0.124	-0.151	-0.574	-10.597	-4.77	-1.692
1	37	A_G31:C36_A	0.003	-0.116	-0.355	-14.801	22.896	-0.823
1	41	A_G51:C396_A	-0.062	-0.13	0.546	7.022	-8.71	-0.842
1	46	A_G57:C391_A	-0.187	-0.349	1.306	10.582	-2.62	0.612
1	50	A_G61:C251_A	-0.094	-0.159	-0.041	-3.075	-20.821	-1.483
1	54	A_G65:C79_A	-0.049	-0.028	0.616	16.217	-0.368	-1.516
1	55	A_G66:C78_A	0.068	-0.111	-0.634	-4.655	-1.11	-3.986
1	56	A_G68:C77_A	-0.174	-0.076	0.151	-10.473	-12.805	-2.344
1	60	A_G73:U75_A	5.837	0.663	-0.569	4.727	-45.289	-66.544
1	64	A_G89:C247_A	-0.16	-0.326	-1.06	4.654	-16.81	9.02
1	66	A_G91:C245_A	-0.018	-0.163	0.071	0.278	-26.923	0.098
1	73	A_G108:C97_A	-0.035	-0.489	-1.364	3.521	-12.221	5.226
1	77	A_G112:C93_A	-0.108	-0.139	-0.661	11.218	-1.281	-1.275
1	78	A_G113:C92_A	-0.115	-0.243	-0.815	20.156	-1.902	2.447
1	79	A_G114:C138_A	-0.056	0.052	1.861	53.882	0.4	-1.332
1	82	A_G117:C134_A	-0.122	-0.134	0.394	-24.413	-10.398	-2.715
1	67	A_G139:C244_A	-0.066	-0.208	0.323	-17.176	-19.779	-6.592
1	68	A_G140:C243_A	0.004	-0.154	0.501	-8.126	-15.964	-5.416
1	86	A_G142:C184_A	-0.163	-0.067	-0.125	1.544	1.729	-1.08
1	87	A_G143:C183_A	0.086	-0.199	-1.051	-14.012	18.432	-6.462
1	88	A_G144:C182_A	-0.227	-0.105	-0.784	-11.453	-18.174	4.32
1	69	A_G190:C242_A	-0.235	-0.013	-1.032	-31.314	-11.497	0.324
1	110	A_G288:C297_A	-0.203	-0.172	0.65	-1.091	11.555	6.179
1	111	A_G289:A296_A	6.245	-3.756	-1.255	2.6	-1.063	-12.071
1	95	A_G301:C284_A	0.02	-0.104	-0.877	-10.455	4.278	1.619
1	96	A_G302:C283_A	-0.014	-0.147	0.335	-2.43	9.499	2.129
1	97	A_G303:C282_A	0.101	-0.133	-0.004	0.529	9.995	-4.113
1	100	A_G306:C279_A	-0.172	-0.236	0.377	12.075	5.844	1.355
1	101	A_G307:C278_A	0.323	-0.224	0.204	-3.475	-6.824	-7.495
1	105	A_G311:C326_A	0.031	-0.13	0.368	17.02	-6.987	-0.242
1	106	A_G312:C325_A	0.031	-0.175	-0.324	7.551	-7.788	-3.358
1	108	A_G314:A323_A	7.323	-2.548	0.524	-4.69	-14.005	18.955
1	114	A_G331:A390_A	2.521	6.441	-1.766	-53.409	20.62	176.18
1	17	A_G338:C21_A	-0.097	-0.099	-0.808	-11.362	-7.058	0.049
1	24	A_G345:U384_A	-3.721	-0.575	0.543	17.861	4.446	8.872
1	27	A_G348:A381_A	6.75	-3.265	-0.171	-2.744	8.82	0.47
1	28	A_G349:A380_A	6.756	-5.172	0.24	18.129	-3.964	-9.71
1	115	A_G351:C378_A	-0.038	-0.128	-0.852	-0.988	4.609	-2.155
1	1	A_U2:A413_A	0.289	-1.044	2.33	-15.693	23.076	22.632
1	2	A_U3:A412_A	0.159	-0.446	1.677	-16.146	18.715	12.73
1	5	A_U6:A409_A	0.016	-0.137	-0.073	6.135	-13.5	4.474
1	8	A_U9:A406_A	-0.231	-0.248	0.935	6.0	-28.026	-14.036
1	11	A_U12:A403_A	-0.125	-0.018	0.173	-15.731	6.903	-3.294
1	30	A_U24:A43_A	0.098	-0.133	0.255	0.422	3.919	2.817
1	38	A_U33:U35_A	-2.154	-0.123	1.453	36.771	-23.812	40.51
1	45	A_U56:A392_A	0.219	-0.114	0.414	-12.919	3.886	2.254
1	48	A_U59:A253_A	-0.05	-0.218	-0.723	-3.862	-2.862	6.627
1	58	A_U70:A74_A	3.266	-0.532	0.454	23.045	-0.927	-95.395
1	62	A_U87:A249_A	-0.107	-0.199	0.853	6.465	5.445	0.184
1	65	A_U90:A246_A	0.043	-0.19	-1.131	17.687	-13.767	4.748
1	85	A_U101:C103_A	4.225	-0.33	1.782	-19.952	-43.963	-57.928
1	75	A_U110:A95_A	-0.062	-0.01	-0.846	14.562	2.279	-4.115
1	70	A_U191:A241_A	0.068	-0.09	-0.185	-13.478	0.809	0.975
1	19	A_U340:A19_A	-0.111	-0.106	-1.147	17.306	-7.113	-0.335
1	20	A_U341:A18_A	-0.065	-0.075	-1.099	23.102	-8.43	-1.826

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.