2A64: Base Pair Morphology Step Parameters

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As of 31-May-2023 number of released structures: 12820

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NDB ID: UR0065 PDB ID: 2A64

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	3	AA_A4A5:U410U411_AA	0.867	-0.982	3.746	2.743	20.655	30.623	-4.562	-0.97	2.652	34.545	-4.588	36.899
1	4	AA_A5U6:A409U410_AA	0.219	-1.383	3.712	-0.126	11.15	33.869	-4.0	-0.378	3.115	18.527	0.209	35.606
1	7	AA_A8U9:A406U407_AA	0.686	-2.343	3.113	2.955	0.963	32.611	-4.313	-0.733	3.093	1.711	-5.247	32.754
1	35	AA_A48A50:U397U398_AA	2.169	-1.296	3.57	-1.981	-1.308	75.544	-1.015	-1.834	3.54	-1.067	1.617	75.575
1	36	AA_A50G51:C396U397_AA	0.159	-1.835	2.762	0.343	4.331	37.412	-3.301	-0.211	2.543	6.724	-0.532	37.655
1	40	AA_A55U56:A392U393_AA	-0.536	-1.579	3.196	-1.595	5.517	33.024	-3.594	0.682	2.923	9.615	2.78	33.505
1	48	AA_A63C64:G80U81_AA	0.102	-1.246	4.078	13.267	-6.784	34.331	-0.787	2.107	4.015	-10.88	-21.278	37.336
1	69	AA_A111G112:C93U94_AA	-0.459	-1.157	3.285	2.705	15.967	30.861	-4.181	1.148	2.373	27.739	-4.699	34.76
1	74	AA_A116G117:C134U135_AA	-1.289	-1.764	3.833	5.305	-3.082	33.136	-2.46	3.232	3.732	-5.346	-9.204	33.684
1	79	AA_A257C258:G274G275_AA	1.919	-2.263	3.243	-5.737	11.207	52.587	-3.116	-2.432	2.54	12.448	6.372	53.969
1	97	AA_A287G288:C297G298_AA	1.33	-1.119	3.266	-7.807	-4.538	66.089	-0.841	-1.516	3.172	-4.141	7.124	66.633
1	55	AA_A295G73:U75A291_AA	-3.218	-3.498	-3.126	-32.6	22.21	87.453	-2.002	2.76	-2.719	15.435	22.656	94.274
1	83	AA_A300G301:C284G285_AA	0.624	-0.614	3.263	5.366	10.191	55.01	-1.229	-0.36	3.156	10.9	-5.739	56.11
1	87	AA_A304A305:U280U281_AA	0.103	-1.514	2.886	-1.267	3.333	34.46	-2.984	-0.341	2.727	5.608	2.132	34.638
1	88	AA_A305G306:C279U280_AA	-0.049	-2.051	2.985	-0.167	3.945	27.691	-5.057	0.068	2.673	8.189	0.347	27.966
1	91	AA_A308C309:G328U329_AA	-0.123	-0.772	3.217	-2.522	4.713	36.057	-1.87	-0.142	3.097	7.563	4.047	36.438
1	93	AA_A310G311:C326U327_AA	0.275	-1.471	2.966	-0.509	2.325	30.038	-3.251	-0.621	2.842	4.478	0.981	30.13
1	100	AA_A330G331:A390A336_AA	2.275	-0.392	2.173	20.281	-12.385	-38.418	1.063	3.878	0.779	16.989	27.821	-44.937
1	17	AA_A339U340:A19U20_AA	0.33	-0.658	3.034	6.712	8.493	31.728	-2.422	0.439	2.781	14.999	-11.853	33.479
1	20	AA_A342C343:G16U17_AA	0.406	-1.469	2.871	0.313	5.099	31.509	-3.454	-0.69	2.611	9.313	-0.571	31.91
1	101	AA_A353C354:G375U376_AA	-0.646	-1.43	4.948	2.606	4.544	25.156	-5.091	2.528	4.534	10.291	-5.902	25.687
1	14	AA_A385C386:G46G47_AA	-0.014	0.759	3.043	-2.08	3.898	-9.598	-9.912	-3.162	2.483	-21.839	-11.651	-10.564
1	99	AA_A389A330:A336U337_AA	-0.432	0.28	3.234	-11.877	15.05	137.885	0.063	0.162	3.258	8.052	6.355	138.5
1	6	AA_C7A8:U407G408_AA	-0.417	-2.331	2.645	2.482	13.647	35.879	-4.705	0.845	1.651	21.202	-3.856	38.385
1	10	AA_C11U12:A403G404_AA	-0.262	-1.308	3.995	-6.359	15.134	30.658	-4.855	-0.678	3.033	26.384	11.087	34.683
1	12	AA_C13G14:U400G402_AA	3.679	-1.949	3.722	-26.682	10.135	25.098	-3.773	-7.693	-0.572	17.576	46.27	37.835
1	27	AA_C23U24:A43G44_AA	-0.056	-2.123	3.479	-6.179	13.357	34.673	-4.955	-0.681	2.496	21.266	9.838	37.579
1	30	AA_C26G27:C40G41_AA	-0.234	-2.149	3.069	5.285	0.0	31.68	-3.885	1.309	2.992	0.001	-9.598	32.106
1	33	AA_C29C30:G37G38_AA	0.135	-1.243	3.154	1.948	8.477	30.124	-3.765	0.087	2.715	15.898	-3.654	31.327
1	34	AA_C30G31:C36G37_AA	0.173	-2.724	3.65	3.037	18.953	23.669	-8.387	0.181	1.199	39.008	-6.251	30.387
1	38	AA_C53C54:G394G395_AA	-0.618	-2.783	3.436	-5.266	-5.744	25.531	-4.288	-0.259	4.001	-12.628	11.577	26.675
1	39	AA_C54A55:U393G394_AA	0.516	-1.988	3.472	-1.601	11.878	31.527	-5.276	-1.139	2.549	20.937	2.823	33.674
1	43	AA_C58U59:A253G254_AA	-0.012	-1.951	3.868	-6.199	8.59	25.875	-6.276	-1.587	3.002	18.239	13.163	27.925
1	45	AA_C60G61:C251G252_AA	-0.106	-1.487	3.748	0.443	19.926	29.791	-5.363	0.238	2.33	34.345	-0.764	35.717
1	47	AA_C62A63:U81G250_AA	-0.407	-3.806	2.121	-18.282	20.411	37.744	-5.547	-0.12	0.283	27.565	24.69	46.347
1	49	AA_C64G65:C79G80_AA	-0.28	-2.136	2.84	-7.349	10.345	28.543	-5.491	-0.558	1.976	19.792	14.06	31.183
1	53	AA_C69U70:A74G76_AA	-3.549	-0.799	2.508	6.034	1.392	57.748	-0.876	3.886	2.141	1.437	-6.228	58.05
1	57	AA_C88G89:C247G248_AA	-0.202	-1.375	2.919	13.58	10.654	28.033	-3.918	2.25	1.982	19.797	-25.235	32.83
1	67	AA_C109U110:A95G96_AA	-1.2	-1.738	2.996	1.901	5.344	23.498	-5.587	3.377	2.442	12.883	-4.584	24.163
1	73	AA_C115A116:U135G136_AA	0.241	-1.81	4.501	-11.425	11.822	37.715	-4.249	-1.954	3.584	17.317	16.736	41.023
1	76	AA_C118C119:G132G133_AA	0.018	-1.153	3.496	2.819	14.175	35.052	-3.615	0.337	2.83	22.394	-4.454	37.828
1	65	AA_C193C194:G236G237_AA	-0.578	-1.554	3.399	5.96	5.199	37.162	-3.048	1.645	3.036	8.046	-9.223	37.965
1	80	AA_C258C259:G273G274_AA	-0.303	-2.538	2.897	-0.85	9.869	35.359	-5.095	0.39	2.142	15.867	1.367	36.678
1	81	AA_C259C260:G272G273_AA	0.33	-2.268	3.721	-0.475	7.235	34.35	-4.92	-0.623	3.187	12.083	0.793	35.084
1	82	AA_C260A262:A271G272_AA	-1.9	-2.327	6.212	15.168	-3.312	75.207	-1.697	2.364	5.883	-2.687	-12.303	76.56
1	92	AA_C309A310:U327G328_AA	-0.137	-2.269	2.925	2.167	13.704	29.888	-5.761	0.519	1.732	24.949	-3.944	32.885
1	96	AA_C313G314:A323G324_AA	1.098	-0.008	3.183	5.922	3.632	58.133	-0.196	-0.817	3.265	3.723	-6.071	58.51
1	21	AA_C343C344:G15G16_AA	-0.143	-1.311	3.127	8.468	19.714	33.544	-3.903	1.058	1.998	30.584	-13.138	39.652
1	22	AA_C344G345:U384G15_AA	3.934	-1.548	3.28	-25.606	4.642	39.909	-2.173	-6.253	0.602	6.084	33.556	47.352
1	24	AA_C346C347:G382G383_AA	-0.694	-2.428	4.039	-4.207	4.018	28.504	-5.893	0.275	3.731	8.055	8.433	29.079
1	25	AA_C347G348:A381G382_AA	-0.156	-0.672	3.291	-0.441	0.032	56.877	-0.707	0.139	3.291	0.033	0.463	56.879
1	15	AA_C386A387:A49G46_AA	1.198	-2.434	3.382	3.366	-3.288	73.289	-1.924	-0.888	3.517	-2.752	-2.817	73.418
1	9	AA_G10C11:G404C405_AA	0.483	-1.738	3.434	5.83	1.144	38.639	-2.743	0.016	3.417	1.716	-8.748	39.076
1	13	AA_G14A385:G47U400_AA	3.24	2.996	3.825	-0.482	-28.896	160.382	1.601	-1.644	3.69	-14.653	0.245	161.009
1	29	AA_G25C26:G41U42_AA	-0.244	-1.355	3.216	-10.685	1.526	41.646	-1.999	-0.713	3.134	2.104	14.733	42.962
1	31	AA_G27G28:C39C40_AA	0.482	-2.297	3.559	3.706	5.795	26.818	-6.243	-0.086	3.043	12.24	-7.828	27.67
1	32	AA_G28C29:G38C39_AA	0.722	-1.662	3.553	-2.475	21.692	45.749	-3.47	-1.021	2.532	26.219	2.992	50.438
1	37	AA_G51C53:G395C396_AA	-1.565	-1.119	3.142	4.322	15.455	52.688	-2.045	1.93	2.617	16.972	-4.747	54.91
1	42	AA_G57C58:G254C391_AA	2.398	-0.897	4.819	-1.295	15.376	60.085	-1.902	-2.419	4.447	15.088	1.27	61.855
1	46	AA_G61C62:G250C251_AA	-0.241	-1.1	2.743	-4.87	9.91	31.05	-3.287	-0.235	2.304	17.821	8.757	32.91
1	50	AA_G65G66:C78C79_AA	-0.265	-1.887	3.603	4.888	14.877	39.214	-4.164	0.874	2.695	21.17	-6.956	42.111
1	51	AA_G66G68:C77C78_AA	-1.274	-1.347	3.302	-7.461	-3.072	38.41	-1.618	0.951	3.572	-4.608	11.19	39.217
1	52	AA_G68C69:G76C77_AA	-0.39	-2.058	3.354	-0.853	-2.899	40.926	-2.606	0.459	3.493	-4.14	1.218	41.033
1	58	AA_G89U90:A246C247_AA	-0.291	-0.666	3.056	-3.971	6.121	33.673	-2.005	-0.079	2.908	10.415	6.757	34.432
1	60	AA_G91G139:C244C245_AA	0.193	-4.606	4.208	5.164	4.604	12.248	-23.404	4.359	2.236	19.655	-22.049	14.06
1	66	AA_G108C109:G96C97_AA	0.245	-1.714	3.402	-4.047	5.566	33.825	-3.749	-1.039	3.041	9.445	6.867	34.498
1	70	AA_G112G113:C92C93_AA	0.251	-0.48	3.26	4.342	15.768	26.383	-3.85	0.343	2.582	31.043	-8.549	30.964
1	71	AA_G113G114:C138C92_AA	-0.861	-3.39	2.123	-32.333	7.876	30.838	-4.898	-0.828	1.498	11.441	46.969	45.071
1	72	AA_G114C115:G136C138_AA	1.645	-2.701	3.865	8.083	-2.817	48.408	-2.986	-1.223	4.212	-3.404	-9.768	49.114
1	75	AA_G117C118:G133C134_AA	-0.212	-1.131	3.212	-4.226	-1.418	32.527	-1.759	-0.345	3.258	-2.517	7.5	32.823
1	61	AA_G139G140:C243C244_AA	0.62	-1.193	3.064	6.499	3.313	35.686	-2.343	-0.144	3.008	5.337	-10.47	36.4
1	62	AA_G140G190:C242C243_AA	-4.18	-1.392	3.936	4.482	1.825	67.676	-1.328	3.944	3.652	1.637	-4.019	67.829
1	77	AA_G142G143:C183C184_AA	-0.748	-1.733	4.116	-1.765	19.64	34.428	-5.19	0.87	2.8	30.303	2.723	39.527
1	78	AA_G143G144:C182C183_AA	2.459	-2.402	4.771	13.021	1.195	27.336	-4.994	-0.451	5.266	2.364	-25.765	30.248
1	63	AA_G190U191:A241C242_AA	0.722	-1.884	3.026	3.256	4.416	29.9	-4.387	-0.793	2.786	8.468	-6.245	30.388
1	98	AA_G288G289:A296C297_AA	-1.443	-0.85	3.641	17.891	1.096	56.775	-0.917	2.416	3.085	1.122	-18.317	59.312
1	84	AA_G301G302:C283C284_AA	0.196	-2.221	2.829	-9.222	5.262	31.556	-4.589	-1.584	2.293	9.351	16.388	33.251
1	85	AA_G302G303:C282C283_AA	0.287	-2.26	2.797	5.052	7.667	36.539	-4.293	0.076	2.311	11.997	-7.905	37.637
1	86	AA_G303A304:U281C282_AA	0.411	-1.702	3.237	0.369	0.501	27.425	-3.711	-0.776	3.211	1.056	-0.779	27.432
1	89	AA_G306G307:C278C279_AA	-0.051	-2.382	3.508	0.842	4.754	38.634	-4.169	0.182	3.202	7.151	-1.267	38.923
1	90	AA_G307A308:U329C278_AA	-0.425	-2.529	3.279	1.064	2.248	24.584	-6.572	1.305	3.018	5.263	-2.49	24.707
1	94	AA_G311G312:C325C326_AA	0.3	-1.912	3.545	6.743	5.961	30.232	-4.676	0.755	3.114	11.123	-12.583	31.513
1	95	AA_G312C313:G324C325_AA	0.899	-1.906	3.676	3.112	0.612	38.223	-2.987	-0.929	3.706	0.932	-4.743	38.35
1	16	AA_G338A339:U20C21_AA	-0.545	-1.173	2.838	-7.319	6.923	33.514	-2.843	-0.034	2.61	11.682	12.35	34.954
1	23	AA_G345C346:G383U384_AA	-0.788	-1.183	3.259	4.678	3.63	54.675	-1.492	1.125	3.109	3.939	-5.077	54.97
1	26	AA_G348G349:A380A381_AA	0.825	-0.544	3.298	11.273	1.649	42.119	-0.898	0.017	3.378	2.246	-15.351	43.565
1	1	AA_U2U3:A412A413_AA	-0.591	-1.88	4.003	5.513	8.526	27.56	-5.777	2.503	3.12	17.175	-11.105	29.337
1	2	AA_U3A4:U411A412_AA	-1.293	-0.857	2.874	9.244	-0.009	25.601	-1.822	4.635	2.277	-0.019	-20.046	27.193
1	5	AA_U6C7:G408A409_AA	0.047	-2.039	4.035	3.034	8.663	33.974	-4.875	0.447	3.42	14.5	-5.079	35.157
1	8	AA_U9G10:C405A406_AA	0.294	-2.156	2.971	-1.75	11.026	31.597	-5.197	-0.742	2.102	19.503	3.095	33.464
1	11	AA_U12C13:G402A403_AA	0.287	-1.916	2.586	8.97	12.153	34.239	-4.131	0.391	1.841	19.508	-14.399	37.331
1	28	AA_U24G25:U42A43_AA	0.026	-1.686	3.028	3.41	13.782	25.185	-5.841	0.556	1.86	28.866	-7.141	28.855
1	41	AA_U56G57:C391A392_AA	-0.24	-2.173	2.247	-6.549	-4.301	27.722	-3.654	-0.611	2.537	-8.757	13.335	28.787
1	44	AA_U59C60:G252A253_AA	-0.456	-0.342	3.062	-0.529	8.865	37.673	-1.527	0.628	2.917	13.5	0.806	38.669
1	54	AA_U70A295:A291A74_AA	-3.192	1.425	0.675	60.358	163.615	97.23	0.477	1.684	0.66	82.464	-30.421	176.294
1	56	AA_U87C88:G248A249_AA	-0.016	-1.47	4.043	-5.675	20.598	33.788	-4.848	-0.718	2.715	31.804	8.763	39.809
1	59	AA_U90G91:C245A246_AA	0.059	-0.798	3.954	3.215	20.08	36.234	-3.623	0.316	3.11	29.598	-4.739	41.383
1	68	AA_U110A111:U94A95_AA	0.548	-1.558	3.73	0.082	14.15	30.673	-5.087	-0.932	2.766	25.139	-0.146	33.708
1	64	AA_U191C193:G237A241_AA	1.737	-2.902	5.345	-11.243	7.839	75.232	-2.711	-1.925	4.81	6.371	9.137	76.288
1	18	AA_U340U341:A18A19_AA	-0.021	-1.211	3.365	1.622	10.646	27.372	-4.591	0.377	2.709	21.473	-3.272	29.377
1	19	AA_U341A342:U17A18_AA	-0.385	-1.312	3.827	-1.336	20.189	29.671	-5.222	0.421	2.48	34.795	2.303	35.785

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.