2A9L: Base Pair Morphology Parameters

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As of 11-May-2022 number of released structures: 12077

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NDB ID: 2A9L PDB ID: 2A9L

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	6	A_A6:U33_A	0.757	-0.099	0.561	-13.608	-12.376	-2.492
1	7	A_C7:G29_A	0.626	-0.137	-0.066	12.195	-2.889	-2.022
1	9	A_C9:G27_A	0.976	-0.344	-0.285	6.367	-1.831	-3.027
1	10	A_C10:G26_A	0.837	-0.215	-0.157	-5.651	-6.215	-1.863
1	14	A_C17:G22_A	1.033	-0.319	0.219	8.727	10.327	-1.439
1	1	A_G1:C38_A	-0.814	-0.157	-0.04	0.72	-5.724	-0.074
1	2	A_G2:C37_A	-1.007	-0.302	-0.044	2.542	-12.234	0.755
1	3	A_G3:C36_A	-1.034	-0.284	0.025	2.4	-10.697	1.073
1	5	A_G5:C34_A	0.355	0.107	-0.358	-28.073	-16.745	-2.003
1	11	A_G14:C25_A	0.135	-0.111	0.463	1.66	16.018	-2.853
1	12	A_G15:C24_A	-0.501	-0.087	0.031	-1.398	-3.26	-1.958
1	15	A_G18:A21_A	4.409	-2.929	-2.456	9.772	-10.996	-55.849
1	4	A_U4:A35_A	0.157	-0.123	-0.431	2.537	-14.123	2.558
1	8	A_U8:A28_A	0.575	-0.129	-0.143	14.533	-9.666	4.298
1	13	A_U16:A23_A	0.151	-0.037	0.102	-4.505	0.821	-3.201

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.