2A9L: Base Pair Morphology Step Parameters

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NDB ID: 2A9L PDB ID: 2A9L

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	6	AA_C7U8:A28G29_AA	-0.102	-2.389	3.219	-3.823	4.461	26.698	-6.086	-0.666	2.778	9.515	8.154	27.326
1	8	AA_C9C10:G26G27_AA	1.447	-2.155	3.427	3.12	5.197	35.859	-4.194	-1.876	3.204	8.366	-5.024	36.351
1	12	AA_C17G18:A21G22_AA	-2.772	-0.321	4.273	10.995	-7.588	25.33	1.34	8.496	2.83	-15.966	-23.135	28.586
1	1	AA_G1G2:C37C38_AA	-0.431	-2.391	3.08	-4.464	8.97	26.444	-6.644	0.015	2.208	18.773	9.343	28.247
1	2	AA_G2G3:C36C37_AA	-0.133	-2.559	3.079	-6.474	11.783	28.983	-6.375	-0.7	1.906	22.104	12.146	31.889
1	3	AA_G3U4:A35C36_AA	-0.225	-2.203	3.219	3.065	3.28	32.9	-4.378	0.881	2.959	5.758	-5.38	33.196
1	5	AA_G5A6:U33C34_AA	1.228	-1.754	2.916	1.923	6.925	21.26	-6.624	-2.57	2.334	18.115	-5.03	22.429
1	9	AA_G14G15:C24C25_AA	0.199	-1.162	3.614	-0.035	17.694	25.748	-5.551	-0.378	2.35	34.937	0.069	31.157
1	10	AA_G15U16:A23C24_AA	0.082	-1.335	3.482	-0.983	15.93	31.262	-4.555	-0.281	2.524	27.436	1.693	35.009
1	4	AA_U4G5:C34A35_AA	0.037	-2.137	3.828	5.333	23.262	34.217	-5.466	0.51	2.02	34.79	-7.976	41.512
1	7	AA_U8C9:G27A28_AA	-0.717	-2.528	3.464	-1.38	8.684	34.465	-5.374	0.98	2.791	14.368	2.283	35.536
1	11	AA_U16C17:G22A23_AA	0.694	-1.095	3.188	1.458	8.146	29.702	-3.55	-1.04	2.825	15.515	-2.777	30.808

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.