A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 29-Jun-2022 number of released structures: 12153
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NDB ID: PD0699  PDB ID: 2AGQ 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
15B_DA5:DT13_C0.3490.057-0.141.181-7.7641.704
17B_DA7:DT11_C0.334-0.1940.085-0.288-6.4554.067
110B_DA10:DT8_C0.033-0.192-0.1046.731-3.990.447
13B_DC3:DG15_C-0.018-0.393-0.1995.243-11.559-1.987
16B_DC6:DG12_C0.2590.038-0.041.979-5.9224.207
111B_DC11:DG7_C0.157-0.127-0.35.6751.336-1.951
11B_DG1:DC17_C-0.289-0.078-0.363-5.752-5.181-6.605
12B_DG2:DC16_C0.02-0.202-0.2017.639-5.768-0.002
18B_DG8:DC10_C-0.169-0.0480.1961.802-4.1030.235
19B_DG9:DC9_C-0.158-0.111-0.29-4.242-9.7870.754
113B_DOC13:DG5_C0.344-0.259-0.4673.425-6.458-2.399
14B_DT4:DA14_C0.352-0.205-0.1180.811-7.6881.619
112B_DT12:DA6_C-0.225-0.189-0.54711.108-4.9441.333

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.