2AGQ: Base Pair Morphology Step Parameters

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NDB ID: PD0699 PDB ID: 2AGQ

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	5	BB_DA5DC6:DG12DT13_CC	0.083	-0.218	3.268	-1.503	7.063	29.284	-1.846	-0.462	3.123	13.709	2.916	30.142
1	7	BB_DA7DG8:DC10DT11_CC	-0.084	-0.412	3.333	-3.086	0.351	31.515	-0.82	-0.427	3.321	0.644	5.664	31.664
1	10	BB_DA10DC11:DG7DT8_CC	0.307	-0.9	3.458	-0.182	4.143	32.77	-2.314	-0.573	3.321	7.307	0.321	33.025
1	3	BB_DC3DT4:DA14DG15_CC	0.518	-0.14	3.409	2.5	8.349	39.812	-1.165	-0.456	3.339	12.086	-3.618	40.717
1	6	BB_DC6DA7:DT11DG12_CC	0.312	0.55	3.356	2.054	9.142	38.632	-0.307	-0.209	3.406	13.576	-3.05	39.71
1	11	BB_DC11DT12:DA6DG7_CC	-0.018	-0.705	3.296	1.887	3.679	26.039	-2.523	0.541	3.158	8.099	-4.155	26.36
1	1	BB_DG1DG2:DC16DC17_CC	0.593	0.134	3.076	-1.889	3.924	32.522	-0.395	-1.355	3.032	6.967	3.354	32.805
1	2	BB_DG2DC3:DG15DC16_CC	-0.899	-0.208	3.261	-3.614	2.563	34.614	-0.739	0.947	3.311	4.286	6.044	34.887
1	8	BB_DG8DG9:DC9DC10_CC	-0.195	-0.747	3.633	3.933	2.487	35.916	-1.587	0.921	3.535	4.012	-6.345	36.207
1	9	BB_DG9DA10:DT8DC9_CC	0.282	-0.254	3.095	-0.179	2.112	31.592	-0.834	-0.548	3.07	3.873	0.328	31.661
1	4	BB_DT4DA5:DT13DA14_CC	-0.217	0.477	3.367	1.644	13.624	33.002	-1.315	0.607	3.29	22.794	-2.75	35.668
1	12	BB_DT12DOC13:DG5DA6_CC	0.177	-0.661	3.61	0.278	7.803	35.612	-2.232	-0.242	3.395	12.573	-0.448	36.43

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.