A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 29-Jun-2022 number of released structures: 12153
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NDB ID: PD0699  PDB ID: 2AGQ 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
15BB_DA5DC6:DG12DT13_CC0.083-0.2183.268-1.5037.06329.284-1.846-0.4623.12313.7092.91630.142
17BB_DA7DG8:DC10DT11_CC-0.084-0.4123.333-3.0860.35131.515-0.82-0.4273.3210.6445.66431.664
110BB_DA10DC11:DG7DT8_CC0.307-0.93.458-0.1824.14332.77-2.314-0.5733.3217.3070.32133.025
13BB_DC3DT4:DA14DG15_CC0.518-0.143.4092.58.34939.812-1.165-0.4563.33912.086-3.61840.717
16BB_DC6DA7:DT11DG12_CC0.3120.553.3562.0549.14238.632-0.307-0.2093.40613.576-3.0539.71
111BB_DC11DT12:DA6DG7_CC-0.018-0.7053.2961.8873.67926.039-2.5230.5413.1588.099-4.15526.36
11BB_DG1DG2:DC16DC17_CC0.5930.1343.076-1.8893.92432.522-0.395-1.3553.0326.9673.35432.805
12BB_DG2DC3:DG15DC16_CC-0.899-0.2083.261-3.6142.56334.614-0.7390.9473.3114.2866.04434.887
18BB_DG8DG9:DC9DC10_CC-0.195-0.7473.6333.9332.48735.916-1.5870.9213.5354.012-6.34536.207
19BB_DG9DA10:DT8DC9_CC0.282-0.2543.095-0.1792.11231.592-0.834-0.5483.073.8730.32831.661
14BB_DT4DA5:DT13DA14_CC-0.2170.4773.3671.64413.62433.002-1.3150.6073.2922.794-2.7535.668
112BB_DT12DOC13:DG5DA6_CC0.177-0.6613.610.2787.80335.612-2.232-0.2423.39512.573-0.44836.43

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.