A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: PR0171  PDB ID: 2AKE 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
114B_A14:A21_B-5.640.0580.37341.74510.9864.303
121B_A31:U39_B0.3770.044-0.484-17.064-21.0970.643
12B_C3:G70_B0.4920.41-0.75120.059-18.8290.811
13B_C4:G69_B0.2780.1520.148-6.884-7.10811.129
15B_C6:G67_B0.415-0.045-0.1217.367-18.3456.559
118B_C28:G42_B-0.6580.625-1.19319.183-12.429-7.881
122B_C32:A38_B2.0660.1030.796-15.10512.411-106.004
18B_C50:G64_B-0.504-0.4060.070.194-11.903-2.003
11B_G1:C72_B-1.155-0.248-0.56115.2922.412-17.325
16B_G7:C66_B0.564-0.2050.105-3.033-12.9781.8
115B_G9:G45_B3.661-2.850.74526.124-53.427-46.059
116B_G26:A44_B0.7232.151-0.1724.239-8.468-5.071
120B_G30:C40_B-0.5430.261-0.935-19.865-17.0320.815
17B_G49:U65_B-2.575-0.649-0.073.305-17.7263.696
19B_G51:C63_B0.5360.015-0.134-11.111-15.4823.54
111B_G53:C61_B-0.645-0.5360.522-1.23-26.039-2.441
14B_U5:G68_B2.297-0.5460.922-8.2791.4381.412
113B_U16:G57_B-6.678-2.8610.1831.188-10.18525.519
117B_U27:A43_B-0.1750.511-1.60726.179-24.18-23.048
119B_U29:A41_B0.0550.067-0.2061.5267.2064.913
110B_U52:A62_B-0.089-0.171-0.04910.138-11.034-3.212
112B_U54:A58_B4.65-2.080.064-8.74413.694-84.879

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.