2AKE: Base Pair Morphology Step Parameters

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NDB ID: PR0171 PDB ID: 2AKE

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	12	BB_A14G9:G45A21_BB	-3.826	1.926	-4.107	-55.86	-104.535	-71.345	-2.605	-1.277	-2.713	62.51	-33.403	-130.935
1	18	BB_A31C32:A38U39_BB	0.092	-1.393	3.209	4.345	15.196	90.572	-1.253	0.017	3.002	10.626	-3.038	91.645
1	1	BB_C3C4:G69G70_BB	-0.015	-2.105	3.79	-7.098	12.687	32.608	-5.373	-1.056	2.752	21.324	11.929	35.622
1	2	BB_C4U5:G68G69_BB	-0.394	-1.542	3.319	-6.418	1.459	36.19	-2.648	-0.264	3.276	2.325	10.227	36.764
1	4	BB_C6G7:C66G67_BB	-0.034	-1.524	3.312	-1.124	18.835	31.663	-4.72	-0.084	2.107	31.289	1.867	36.735
1	15	BB_C28U29:A41G42_BB	-0.312	-2.694	3.752	-14.478	14.411	35.577	-5.481	-1.183	2.471	21.539	21.638	40.859
1	7	BB_C50G51:C63G64_BB	-0.005	-1.573	3.39	3.234	18.501	36.647	-4.126	0.335	2.355	27.332	-4.778	41.032
1	5	BB_G7G49:U65C66_BB	-0.145	-1.942	2.841	0.99	11.391	22.974	-6.741	0.532	1.693	26.589	-2.311	25.628
1	13	BB_G9G26:A44G45_BB	-2.891	-1.36	5.97	71.624	-33.808	-88.219	1.743	0.226	6.105	21.311	45.148	-112.822
1	17	BB_G30A31:U39C40_BB	-0.127	-1.305	3.443	-2.686	4.988	34.498	-2.946	-0.206	3.229	8.341	4.491	34.946
1	6	BB_G49C50:G64U65_BB	-0.221	-1.836	3.498	-2.221	-1.328	38.84	-2.581	0.04	3.563	-1.994	3.335	38.923
1	8	BB_G51U52:A62C63_BB	0.01	-1.579	2.803	-0.931	-2.468	26.106	-2.893	-0.244	2.934	-5.446	2.055	26.236
1	10	BB_G53U54:A58C61_BB	-2.442	-1.822	3.647	3.766	-2.887	92.462	-1.2	1.768	3.611	-1.998	-2.606	92.556
1	3	BB_U5C6:G67G68_BB	0.248	-1.791	2.445	13.596	2.93	27.844	-3.762	1.471	2.138	5.663	-26.279	31.062
1	14	BB_U27C28:G42A43_BB	0.915	-1.585	3.611	-1.556	11.21	35.318	-4.042	-1.655	2.947	17.917	2.487	37.032
1	16	BB_U29G30:C40A41_BB	-0.515	-1.683	3.695	5.265	16.48	28.87	-5.592	1.747	2.302	29.906	-9.555	33.562
1	9	BB_U52G53:C61A62_BB	1.945	-1.926	3.418	4.213	6.926	26.176	-5.813	-3.047	3.086	14.846	-9.03	27.382
1	11	BB_U54U16:G57A58_BB	-4.123	-1.766	5.604	-15.257	-2.64	81.461	-1.219	2.436	6.211	-2.007	11.597	82.667

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.